Research Abstracts Online
January 2009 - March 2010
University of Minnesota Duluth
College of Pharmacy Duluth
Department of Pharmacy Practice and Pharmaceutical Sciences
PI: Jon N. Rumbley
Protein-Protein and Protein-Substracte Specificity in Two Unique Membrane Bound Proteins
This researcher is working on the characterization of protein-protein and protein-substrate recognition/specificity by sweet taste receptors and organic anion transporting polypeptides (Oatps), respectively. In each case, the protein structures have been constructed by homology modeling for use in structure based hypothesis generation. Of interest for the sweet taste receptor is the extracellular hydrophilic domain and its interaction with both small ligands and, more importantly, with the sweet-tasting protein brazzein. Protein-protein docking and molecular dynamics are used to understand how brazzein binds and elicits its sweet taste, with interest in surface complimentarity and backbone flexibility. The computational work is being used to drive mutagenesis studies on brazzein.
The Oatp project is concerned with small-molecule transport selectivity across the cell membrane. Oatps appear to be members of the large Major Facilitator Superfamily (MFS) of transporters, which the researcher has used for modeling. This project uses small-molecule docking and dynamics, pharmacophore modeling, and 3D-QSAR.