posted on January 26, 2015

MSI Principal Investigator Daniel Bond (Biotechnology Institute; College of Biological Sciences, College of Science and Engineering) is studying how Geobacter microbes use metals for energy. In a recent paper in mBio, he and his co-authors discuss their discovery of a protein that helps the bacteria utilize these metals as they grow underground. The paper’s lead author, Caleb Levar, and co-author Chi Ho Chan are also MSI users. The paper was also written up on the U Discover blog.

The Bond group uses MSI resources for genome assembly of metal-reducing bacteria and for data analysis.


posted on January 23, 2015

MSI Principal Investigator Daniel Voytas (Genetics, Cell Biology, and Development; College of Biological Sciences, Medical School) received the Entrepreneurial Researcher Award from the Office of the Vice President for Research at a ceremony in December 2014. This award, one of the 2014 Innovation Awards, recognizes a “University faculty member or researcher who displays an exemplary entrepreneurial spirit by their initiative to not only innovate new technologies but to also move those technologies from the university laboratory to the market.” (Description from the Award Ceremony program.)

Professor Voytas was recognized for the invention of TALENs, a method of gene editing. He uses MSI resources to help monitor mutagenesis resulting from genetic alterations. The OVPR has also created a video about his work.

posted on January 22, 2015

The sixth International Summer School on HPC Challenges in Computational Sciences is now accepting applications for this summer’s session, which will be held June 21-26, 2015, in Toronto, Canada. Graduate students and post-docs from Canada, Europe, Japan, and the U.S. are invited to apply.

The application deadline is March 11, 2015. Application instructions and complete information about the program can be found on the Summer School website.

Leading computational scientists from around the world will provide instruction in a number of topics related to high-performance computing. Meals, housing, and travel are provided. Graduate students and post-docs in all science and engineering fields are eligible. Preference will be given to those with parallel programming experience and research that benefits from using HPC systems.

The program is sponsored by Compute/Calcul Canada, the Extreme Science and Engineering Discovery Environment (XSEDE), the Partnership for Advanced Computing in Europe (PRACE), and the RIKEN Advanced Institute for Computational Science (RIKEN AICS).

posted on January 15, 2015

Professor Vipin Kumar (Head, Computer Science and Engineering; MSI Fellow) was featured in the Office of the Vice President for Research’s Annual State of Research Report. VP Brian Herman presented this report to the University Regents in December 2014.

Professor Kumar was the recipient of an OVPR Minnesota Futures grant; these seed grants help faculty advance new ideas and foster interdisciplinary research. Professor Kumar’s Futures project uses images collected by earth-observing satellites to understand changes in forest cover. This seed grant helped the Kumar group receive two additional grants: a $3.2 million grant from the Planetary Skin Institute and a $10 million “Expeditions in Computing” grant from the National Science Foundation.

Professor Kumar uses MSI to develop high-performance data-mining algorithms and tools for mining large-scale datasets in a variety of applications. The huge size of these datasets and their complexity require the use of the high-performance computing resources provided by MSI. Besides the project above, the Kumar group is also developing data-mining techniques for analyzing biomedical data.

You can read the entire Annual State of Research Report on the OVPR website. A more detailed story about Professor Kumar’s research also appears in the "Research excellence in practice" post on the OVPR’s Inquiry blog.


posted on January 13, 2015

Professor Joseph Metzger, an MSI Principal Investigator and Chair of the Department of Integrative Biology and Physiology, is the Principal Investigator for a $2.6 million NIH grant that will fund research into new treatments for heart attacks. The Metzger group uses MSI for molecular dynamics simulations as part of their research into proteins that affect the contraction of the heart.

Other lead investigators include Dr. Demetris Yannopolous (Medical School) and Regents Professor Frank Bates (Chemical Engineering and Materials Science). An article about the grant and the research it will fund can be found on the AHC’s HealthTalk blog.