GeneMark is the name of a set of gene prediction programs developed at the Georgia Institure of Technology. Genemark-ET is a member of this set of software for semi-supervised analysis of novel genomes.

To use this program at MSI, please send a a request to and ask to be added to the GeneMark group. The use of GeneMark at MSI is limited to academic researchers.





To run this software interactively in a Linux environment run the commands:

module load genemark  [options]  --sequence [filename]


For a list of all options use the command:


If you encounter the error: " Command not found" or something similar, you are probably not part of the GeneMark group. Please contact with a request to be added.
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