Windows

Funannotate

Funannotate is a pipeline for genome annotation originally designed for use with fungi genomes, but it can also be applied for other eukaryotes.

PBSuite aka PBJelly

PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. Each step in PBJelly’s workflow can be run on a cluster, thus parallelizing the gap filling process for rapid turn around, even for very large eukaryotic genomes.

http://sourceforge.net/p/pb-jelly/wiki/Home/

Spotfire

TIBCO Spotfire is no longer offered at MSI

The license to Spotfire expired Jan 1, 2016 and will not renewed.

 

Blast2Go

Is no longer supported at MSI. 

Cytoscape

Cytoscape is an open source bioinformatics software platform for visualizing complex networks and integrating with gene expression profiles and other state data.

OpenFOAM

OpenFOAM is an open source software package which is designed to scale well on large distributed memory systems. While originally written for CFD, with it's open source strategy and a large user base OpenFOAM has grown to be a general purpose finite element toolbox.

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