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Molden

Molden is a visualization package for viewing the molecular density, molecular orbitals, electron density, chemical structure, etc., from the output files of GAMESS, Gaussian, and MOPAC/AMPAC calculations.With the use of the z-matrix editor initial guesses can be created for input files.

Molekel

Molekel is an advanced interactive 3D-graphics package for molecular sciences. It is a molecular graphics package for visualizing molecular and electronic structure data from the output of various chemistry applications (GAUSSIAN 94/98, GAMESS-US, ADF and many others).

SOAPdenovo

SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes. The program is specially designed to assemble Illumina GA short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way.

ChemBioOffice Ultra; ChemOffice; Chem Office; ChemDraw

This ultimate chemistry & biology suite is designed to meet the needs of both chemists and biologists. ChemBioOffice 2012 includes ChemBioDraw Ultra 13.0, ChemScript 13.0, ChemBio3D Ultra 13.0, Chem3D interfaces to Schrödingers Jaguar and Gaussian, ChemFinder Ultra 13.0, with support for Oracle, ChemBioFinder Ultra 13.0, E-Notebook 13.0, ChemDraw, as well as a collection of databases.

Accessing Software Resources

MSI provides access to approximately 400 software packages. To find out if a particular software package is installed, you can browse or search a list of the software packages that MSI provides under the Help and Documentation section of this website. The MSI webpage includes descriptions of...

Choosing a Job Queue

Summary Most MSI systems use job queues to efficiently and fairly manage when computations are executed. A job queue is an automated waiting list for use of a particular set of computational hardware. When computational jobs are submitted to a job queue they wait in the queue in line until the...

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