The Quick Start guides for each HPC system have instructions for submitting jobs. We also have instructions for creating and submitting job scripts , as well as an overview of available job queues .
The annual supercomputing conference, SC15, was held the week of November 16-20, 2015 in Austin, Texas. MSI participated in one of the sub-meetings, a “Birds of a Feather” meeting on Ceph in HPC Environments . Several organizations discussed how they use Ceph to address issues associated with big...
JAGS (Just Another Gibbs Sampler) is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation.
SPAdes (St. Petersburg genome assembler) is an assembly toolkit with a variety of assembly pipelines.
NOTE: Due to lack of use, this software module has been disabled and will be removed from MSI systems on 9/28/2017. If you need this software, please contact firstname.lastname@example.org .
ParaView is an open-source, multi-platform application designed to visualize data sets of size varying from small to very large.
Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes).
Phobius is "a combined transmembrane topology and signal peptide predictor".
Bazel is a build tool from Google currently available in a public beta.
Spliced Transcripts Alignment to a Reference (STAR) is a software package developed for aligning large RNA-seq datasets.