posted on September 12, 2013 As part of the ongoing selection process for the next HPC system at MSI, MSI has invited top high performance computing vendors to present their high performance computing portfolios and roadmaps to users in a Town Hall setting. IBM will be on-site Friday, September 20...
The Quick Start guides for each HPC system have instructions for submitting jobs. We also have instructions for creating and submitting job scripts , as well as an overview of available job queues .
For users who are new to supercomputing, the University of Oklahoma Norman campus is offering Supercomputing in Plain English (SiPE) for the Spring 2018 semester. The course begins January 23, 2018 and classes are held on Tuesdays through May 1. They are available live via teleconferencing, 12:30pm...
The annual supercomputing conference, SC15, was held the week of November 16-20, 2015 in Austin, Texas. MSI participated in one of the sub-meetings, a “Birds of a Feather” meeting on Ceph in HPC Environments . Several organizations discussed how they use Ceph to address issues associated with big...
Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes).
ParaView is an open-source, multi-platform application designed to visualize data sets of size varying from small to very large.
lumpy is a general probabilistic framework for structural variant discovery.
JAGS (Just Another Gibbs Sampler) is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation.
SPAdes (St. Petersburg genome assembler) is an assembly toolkit with a variety of assembly pipelines.
Phobius is "a combined transmembrane topology and signal peptide predictor".