lumpy is a general probabilistic framework for structural variant discovery.
FALCON and FALCON-Unzip provide algorithms to assemble Single Molecule Real-Time (SMRT(R)) Sequencing data into highly accurate, contiguous, and correctly phased diploid genomes.
Jeff McDonald, Assistant Director of HPC Operations, and Bill Hellriegel, Assistant to the Director, were interviewed at the Minnesota High Tech Association's Spring Conference on April 25, 2012. Jeff and Bill talked about MSI's resources and the MSI services that are available to Minnesota...
You can see which MSI systems you can access by logging in to myMSI , and then clicking "My Profile", followed by "My Accounts" . Once you know which labs or HPC resources you can access, you can get their hostnames from the MSI website.
MSI’s newest HPC resource, Koronis, is now operational and we are accepting proposals for its use. See our press release for more information about the Koronis system. Koronis users must have NIH funding or be performing research that will lead to an NIH grant proposal. See the Koronis webpage for...
Network access to MSI systems is currently available only on-campus or through the University's VPN . GPUT Visualization features are now available through our Interactive HPC resources . The current version of the NX client can be downloaded from our NX FAQ page . Next Maintenance Day: Wednesday,...
BRAKER1 is software for unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS.
LAMMPS (Large-scale Atomic/Molecular Massively Parallel Simulator) is a software suite for classical molecular dynamics simulations developed and maintained by Sandia National Labs.
From the Pilon documentation: "Pilon uses read alignment analysis to diagnose, report, and automatically improve de novo genome assemblies as well as call variants."
GNU Image Manipulation Program (GIMP) is a general image processing program for UNIX machines. It can be used for editing images,creating logos and adding text. It supports multiple layers. Gimp can handle several image formats like, tiff, jpeg, etc.