Stratus is a subscription-based Research Compute Cloud with support for Protected Data Backed by HPE hardware and open-source software, OpenStack (Newton) and Ceph (Kraken) Three types of cloud storage: Block device Volumes S3-compatible Protected Object Cache S3-compatible Persistent Object...
Minnesota Supercomputing Institute (MSI) Provides Modeling and Analysis Support for Development of INVELOX, A Wind-Generated Energy Technology Developed by SheerWind, Inc. SheerWind, Inc. , a Minnesota-based company, has been developing novel approaches for generating electric power from the wind...
The MEME/MAST is software system used for discovering motif (highly conserved regions) in groups of related DNA or protein (MEME) and searching sequence databases using motifs (MAST).
Amira is a powerful, multifaceted 3D software platform for visualizing, manipulating, and understanding biomedical data coming from all types of sources and modalities.
LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454.
ABySS is a de novo, parallel, paired-end genomic sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes. To assemble transcriptome data, consider the related program trans-abyss. Homepage: http://www.bcgsc.ca/platform/bioinfo/software/abyss
Note: Due to lack of use, this software module has been disabled and will be removed from MSI systems on 12/21/17. If you need this software, please contact email@example.com . FIRE is a motif discovery component of IGET. The software is available at: https://tavazoielab.c2b2.columbia.edu/FIRE/ Details on the implementation are published here: http://dx.doi.org/10.1016/j.molcel.2007.09.027
Note: Due to lack of use, this software module has been disabled and will be removed from MSI systems on 12/21/17. If you need this software, please contact firstname.lastname@example.org . The Embedded Python Molecular Viewer (ePMV) works with a variety of software applications to provide visualization of molecular structures.
ORCA is a quantum chemistry tool with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to correlated ab initio methods. It can also treat environmental and relativistic effects.
Note: Due to lack of use, this software module has been disabled and will be removed from MSI systems on 12/21/17. If you need this software, please contact email@example.com . GeneHunter is a program for linkage analysis.