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MSI Users Bulletin - September 2015 (Volume 12, Number 3)

The Users Bulletin provides a summary of new policies, procedures, and events of interest to MSI users. It is published quarterly. 1. Xeon Phi Seminars: Intel will be providing a seminar and hands-on training about developing codes for the Xeon Phi coprocessor. The seminar will be held on September...

MSI Users Bulletin - September 2015

Published on September 15, 2015 The Users Bulletin provides a summary of new policies, procedures, and events of interest to MSI users. It is published quarterly. 1. Xeon Phi Seminars: Intel will be providing a seminar and hands-on training about developing codes for the Xeon Phi coprocessor. The...

Partek Genomics Suite

Partek Genomics Suite (Partek GS) is a software suite of statistics and interactive data visualization designed to extract biological signals from noisy data. Partek GS is able to support microarray and next generation sequencing technologies including DGE and gene expression, RNA-seq and alternative splicing, copy number and association, ChIP-chip, ChIP-seq, and microRNA.

MacVector

MacVector is a sequence analysis software for Macintosh computers. It provides sequence editing, primer design, Internet database searches, protein analysis, sequence confirmation, contig assembly capabilities, multiple sequence alignment, phylogenetic reconstruction, coding region analysis, and a wide variety of other functions. Notice to users: Though still available for access MacVector will no longer be updated after 10/2014. Users alternate options include: CLC Main workbench , CLC Genomics workbench

How do I use Globus to transfer data to Second Tier Storage at MSI?

As a Beta service, MSI has a Globus endpoint on the MSI Second Tier storage system, with endpoint name umnmsi#tier2 . This endpoint allows MSI users to transfer data to and from MSI Second Tier storage. MSI's Second Tier storage system is currently an implementation of the Ceph distributed...

Facilities Overview (Full)

Established in 1983, the Minnesota Supercomputing Institute (MSI) is the University of Minnesota's principle center for computational research. MSI provides services to over 560 active groups that sponsor more than 3,300 unique users from 19 different university colleges, maintaining an array of...

National Cancer Institute work by MSI

MSI has created extensions for the National Cancer Institute's caGrid system. caGrid supports caBIG, the National Cancer Institute's Cancer Biomedical Informatics Grid initiative, which links cancer researchers and their data. caGrid provides researchers at different institutions tools that allow...

Why is [module] no longer available?

MSI tracks the utilization of the software modules installed on our systems. When a module has not been utilized in more than a year, it becomes a candidate for decommissioning and removal from our systems. Once a candidate for decommissioning has been identified, access to that software will be...

WebViz: A Collaborative Visualization System

Thanks to the advancement of computing hardware, researchers in all fields are able to generate huge datasets. Data processing, including analysis and visualization, has to tackle the problem of large-data throughput. Both the software and hardware architectures of current computational science...

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