Python is a high level programming language that aims to combine remarkable power with very clear syntax. Anaconda is a free cross-platform Python distribution from Continuum Analytics. It comes built in with various scientific Python packages such as NumPy, SciPy, Pandas, Matplotlib, Numba, etc.
Python is a high level programming language that aims to combine remarkable power with very clear syntax. The Enthought Python Distribution is a cross-platform environment for scientific computing in Python, and includes the Canopy IDE and package manager. MSI has installed an academic-licensed version that includes hundreds of modules, including tools that enable efficient parallel computations.
Slicer, or 3D Slicer, is a free, open source software package for visualization and image analysis. It includes tools for segmentation, rendering, registration of MRI, CT, US, nuclear medicine, and microscopy images.
FSL is a library of analysis tools for FMRI, MRI and DTI brain imaging data. It has both command line and graphical user interface.
Avizo software is a powerful, multifaceted tool for visualizing, manipulating, and understanding scientific and industrial data.
VolView is an intuitive, interactive system for volume visualization that allows researchers to quickly explore and analyze complex 3D medical or scientific data on a standard PC. Users can easily generate informative images and navigate the data for further analysis. 3D tools include composite and MIP volume rendering, contouring, cropping, and oblique reformatting. Segmentation can be performed, and resulting structures can be analyzed using distance, angle, surface area and volume measurement tools. Polygonal surface models can be exported for rapid prototyping.
ImageJ is a public domain utility for image processing and analysis. It is based on Java and can be extended to create several plugins and develop applications from its toolkit.
ParaView is an open-source, multi-platform application designed to visualize data sets of size varying from small to very large.
Matlab is a high level technical computing language and interactive environment for data visualization, data analysis, numerical computation, and algorithm development.