Microarray Data Analysis

Partek Genomics Suite

Partek Genomics Suite (Partek GS) is a software suite of statistics and interactive data visualization designed to extract biological signals from noisy data. Partek GS is able to support microarray and next generation sequencing technologies including DGE and gene expression, RNA-seq and alternative splicing, copy number and association, ChIP-chip, ChIP-seq, and microRNA.

Bioconductor

Bioconductor is an open source and open development software project to provide tools for the analysis and comprehension of genomic data. The broad goals of the projects are to provide access to a wide range of powerful statistical and graphical methods for the analysis of genomic data, to facilitate the integration of biological metadata in the analysis of experimental data, and to allow the rapid development of extensible, scalable, and interoperable software.

Expressionist - Microarray Data Analysis System

The Expressionist is a comprehensive microarray data analysis system. This commercial web-based software is made from GeneData Inc.

It consists of three closely integrated modules:

Refiner:

As workflow for data loading and quality assurance.

CoBi:

Oracle database for expression data and annotation information storage and management.

Analyst:

Statistic tools for data analysis.

Instruction: Accessible only inside

Expressionist

3/10/2015

Expressionist has been discontinued, it is no longer accessible via MSI. If you need assistance please contact MSI, help@msi.umn.edu.

 

GeneData Expressionist is a comprehensive microarray data analysis system. It consists of several closely integrated modules.