PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. Each step in PBJelly’s workflow can be run on a cluster, thus parallelizing the gap filling process for rapid turn around, even for very large eukaryotic genomes. http://sourceforge.net/p/pb-jelly/wiki/Home/
NBO is a program for generating natural bond orbitals. NBO is a module that can be built into many electronic structure programs. NBO is currently built into the following versions of GAUSSIAN: None
OpenOffice.org is a multi-platform office productivity suite. It includes the key desktop applications, such as a word processor, spreadsheet, presentation manager, and drawing program, with a user interface and feature set similar to other office suites. Sophisticated and flexible, OpenOffice.org also works transparently with a variety of file formats, including those of Microsoft Office.
The PQS ab initio module is a computational chemistry package capable of performing Hartree-Fock, semi-empirical, density functional theory, and MP2 calculations.