Mimics is useful for visualization and segmentation of CT / MR images and 3D rendering of objects. It also provides an interface to create FEM meshes. MSI currently has the following modules Mimics basic - Allows segmentation, registration and measurement on 3D object STL+ - Allows creation of 3D object for rapid prototyping FEM - Add material property, create FEM mesh and export files to standard FEM packages
Gaussian performs semiempirical and ab initio molecular orbital (MO), density functional, and molecular mechanics calculations. To use this program at MSI, please send a request to firstname.lastname@example.org and ask to be added to the Gaussian group. To use Gaussian 09, you need to be a researcher at the Twin Cities campus. MSI is in the process of deprecating some older, unused versions of Gaussian. Below is a list of modules that are slated for removal, and for each, a corresponding supported module. If you are using one of the deprecated modules, please transition to the listed supported module...
R is a language and environment for statistical computing and graphics. R provides a wide variety of statistical (linear and nonlinear modelling, classical statistical tests, time-series analysis, classification, clustering, ...) and graphical techniques, and is highly extensible. The S language is often the vehicle of choice for research in statistical methodology, and R provides an Open Source route to participation in that activity.
ClustalW is a general purpose multiple alignment program for DNA or proteins. ClustalX is a graphical user interface for the ClustalW multiple sequence alignment program.
QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline.