UnRar is a utility for extracting WinRar archives (.rar files).
From the HISAT webpage: "HISAT is a fast and sensitive spliced alignment program for mapping RNA-seq reads. In addition to one global FM index that represents a whole genome, HISAT uses a large set of small FM indexes that collectively cover the whole genome (each index represents a genomic region of ~64,000 bp and ~48,000 indexes are needed to cover the human genome). These small indexes (called local indexes) combined with several alignment strategies enable effective alignment of RNA-seq reads, in particular, reads spanning multiple exons. The memory footprint of HISAT is relatively low (~...
From the NCCL website: NCCL (pronounced "Nickel") is a stand-alone library of standard collective communication routines, such as all-gather, reduce, broadcast, etc., that have been optimized to achieve high bandwidth over PCIe. NCCL supports an arbitrary number of GPUs installed in a single node and can be used in either single- or multi-process (e.g., MPI) applications.
lumpy is a general probabilistic framework for structural variant discovery.