Note: Due to lack of use, this software module has been disabled and will be removed from MSI systems on 12/21/17. If you need this software, please contact email@example.com . Genscan is a program for predicting the locations and exon-intron structures of genes in genomic sequences from a variety of organisms. GENSCAN was developed by Chris Burge in the research group of Samuel Karlin, Department of Mathematics, Stanford University. The program and the model that underlies it are described in:Burge, C. and Karlin, S. (1997) Prediction of complete gene structures in human genomic DNA. J. Mol...
Note: MSI's SAS license will permanently expire on 10/29/17, after which the software will no longer be available. SAS is a scalable, integrated software environment and a flexible and extensible programming language designed for data access, data manipulation, and data analysis. It offers data management and predictive analytic capabilities, data mining process, drug discovery solutions, and much more.
Ingenuity Pathways Analysis (IPA) is a software and database search tool for finding functions and pathways for specific biological states. It is a web-delivered application that makes use of the Ingenuity Pathways Knowledge Base, a currated database consisting of millions of individually modeled relationships between proteins, genes, complexes, cells, tissues, drugs, and diseases. It currently has data for humans, rats, and mice.
RECON is software for automated de novo identification of repeat families from genomic sequences. This software was originally developed by the Eddy lab . A newer version that fixes several bugs is available from the RepeatMasker webpage.
From the GNU website: "The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. It is free software under the GNU General Public License. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. There are over 1000 functions in total with an extensive test suite."