deFuse is a software package for gene fusion discovery using RNA-Seq data.
DCDFLIB is a collection of routines for calculating cumulative distribution functions, inverses, and other parameters.
Cutadapt removes adapter sequences from high-throughput sequencing data. This is usually necessary when the read length of the sequencing machine is longer than the molecule that is sequenced, for example when sequencing microRNAs.
CDO is a large tool set for working on climate and NWP model data. NetCDF 3/4, GRIB 1/2 including SZIP and JPEG compression, EXTRA, SERVICE and IEG are supported as IO-formats. Apart from that CDO can be used to analyse any kind gridded data not related to climate science. CDO has very small memory requirements and can process files larger than the physical memory.
CDO is open source and released under the terms of the GNU General Public License v2 (GPL).
Software which uses a clustering approach for identification of enriched domains from histone modification ChIP-Seq data.
"RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST+ suite. The primary difference between this distribution and the NCBI distribution is the addition of a new program "rmblastn" for use with RepeatMasker and RepeatModeler."
CREST (Clipping Reveals Structure) is a new algorithm for detecting genomic structural variations at base-pair resolution using next-generation sequencing data. Publication: http://www.ncbi.nlm.nih.gov/pubmed/21666668
Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions.
Circos is ideal for creating publication-quality infographics and illustrations with a high data-to-ink ratio, richly layered data and pleasant symmetries. Circos is flexible. Although originally designed for visualizing genomic data, it can create figures from data in any field.