Why is [module] no longer available?

MSI tracks the utilization of the software modules installed on our systems. When a module has not been utilized in more than a year, it becomes a candidate for decommissioning and removal from our systems. Once a candidate for decommissioning has been identified, access to that software will be turned off, but the software will remain on our systems. If no reason to re-enable the candidate emerges within six months, the software will then be removed from MSI systems. Below you will find a current list of software slated for decommissioning. The listed software is currently disabled for users, and will be removed from our systems on the indicated removal date.

 

Please contact help@msi.umn.edu if you believe a piece of software has been included on this list in error, or if you need a listed piece of software for your research.

 

 

Software Name Module Name Version(s)    Platform Deactivation Date Removal Date
vlc vlc 2.0.1 Linux 7/13/2017 1/13/2018
visit visit 2.3.2 Linux 7/13/2017 1/13/2018
velvet velvet 1.2.10, 1.2.07 Linux 7/13/2017 1/13/2018
usearch usearch 5.2 Linux 7/13/2017 1/13/2018
unrar unrar 2.71 Linux 7/13/2017 1/13/2018
turbomole turbomole 6.4, 6.3.1, 5.10.2 Linux 7/13/2017 1/13/2018
trinityrnaseq trinityrnaseq

2.0.6, 20140413, 20131110, 20130814,

20121005, 20120608, 20120317,

20110820, 20110519

Linux 7/13/2017 1/13/2018
totalview totalview 8.8.0-1 Linux 7/14/2017 1/14/2018
tophat tophat

2.0.0, 2.0.1, 2.0.3, 2.0.4,

2.0.5, 2.0.6, 2.0.7, 2.0.7, 2.0.8, 2.0.9

Linux 7/14/2017 1/14/2018
texlive texlive 2012 Linux 7/14/2017 1/14/2018
Sybyl-X sybyl, sybyl/x, sybyl-x 2.1.1, 2.1, 1.1.083, 8.0 Linux 7/14/2017 1/14/2018
Swig swig 1.3.40, 2.0.4 Linux 7/17/2017 1/17/2018
Star-CCM star-ccm 6.02.009_04, 6.02.007_01, 5.06.010_02 Linux 7/17/2017 1/17/2018
SparseHash sparsehash 2.0.2 Linux 7/17/2017 1/17/2018
Spark spark 1.3.0 Linux 7/17/2017 1/17/2018
SGA sga 20120608 Linux 7/17/2017 1/17/2018
RStudio rstudio 0.96.331 Linux 7/17/2017 1/17/2018
RepeatMasker repeatmasker 3.3.0 Linux 7/17/2017 1/17/2018
QChem qchem 3.1_serial, 3.1_parallel, 3.2_serial, 3.2_parallel Linux 7/17/2017 1/17/2018
Pyton-EPD python-epd 1.0.3, 1.1.0 Linux 7/17/2017 1/17/2018
PyMol pymol 1.5, 1.6 Linux 7/17/2017 1/17/2018
ProJ proj 4.9.2 Linux 7/17/2017 1/17/2018
Prodigal prodigal 2.6.3 Linux 7/18/2017 1/18/2018
Primer3 primer3 2.2.3 Linux 7/18/2017 1/18/2018
Pig pig 0.8.1 Linux 7/18/2017 1/18/2018
Picard picard 1.68 Linux 7/18/2017 1/18/2018
Picard Tools picard-tools 1.126 Linux 7/18/2017 1/18/2018
phred phred 0.071220-beta Linux 7/18/2017 1/18/2018
phrap phrap 1.090518 Linux 7/18/2017 1/18/2018
phenix phenix 1.9.2-1692, 1.0-1692, 1.8.1-1168, 1.7.3-928 Linux 7/18/2017 1/18/2018
petsc petsc 3.2.7, 3.4.4, 3.4.5, 3.4.5_gcc4.9.2_ompi1.8.4 Linux 7/18/2017 1/18/2018
pbsuite pbsuite 14.1, 14.7.14 Linux 7/18/2017 1/18/2018
parmetic parmetis

4.0.3/width64_intel2015update2_ompi1.8.4,

4.0.3/width64_gcc4.9.2_ompi1.8.4, 

4.0.3/width32_intel2015update2_ompi1.8.4,

4.0.3/width32_gcc4.9.2_ompi1.8.4,

 4.0.3/int32real64_intel2015update2_ompi1.8.4

Linux 7/18/2017 1/18/2018
pandaseq pandaseq 2.4 Linux 7/19/2017 1/19/2018
paml paml 4.5 Linux 7/19/2017 1/19/2018
ORCA orca 2.7.0, 2.8.0, 2.9.0, 3.0.2 Linux 7/19/2017 1/19/2018
openeye openeye 20120503 Linux 7/19/2017 1/19/2018
Oases oases 0.1.22SB, 0.1.22 Linux 7/19/2017 1/19/2018
nwchem nwchem 6.11_pmpi_8.0.1 Linux 7/19/2017 1/19/2018
nvbio nvbio 0.9.9 Linux 7/19/2017 1/19/2018
ncview ncview ncview212 Linux 7/19/2017 1/19/2018
ncbi_blast ncbi_blast 2.2.27 Linux 7/19/2017 1/19/2018
NAMD namd

2.7b3, 2.7b4-opmi,

2.8b1-libverbs, 2.9-20120430-intel-verbs,

2.9b2-libverbs-CUDA

Linux 7/19/2017 1/19/2018
mumps mumps 5.0.0/intel2015update2_impi5.0.3.048 Linux 7/19/2017 1/19/2018
mothur mothur 1.21.1, 1.23.1_ompi1.4.4, 1.25.1, 1.27.0_ompi1.4.4 Linux 7/19/2017 1/19/2018
molpro molpro 2012.1.large_domain, 2012.1.8 Linux 7/20/2017 1/20/2018
MOE moe 2010.10, 2011.10 Linux 7/20/2017 1/20/2018
mira mira 3.4.0, 4.0rc4 Linux 7/20/2017 1/20/2018
metis metis

5.1.0/width64_gcc4.9.2, 

5.1.0/width32_intel2015update2, 

5.1.0/width32_gcc4.9.2, 

5.1.0/int32real64_gcc4.9.2

Linux 7/20/2017 1/20/2018
metagenomicsQC metagenomicsQC 1.0 Linux 7/20/2017 1/20/2018
MEGAN megan 20120612 Linux 7/20/2017 1/20/2018
Maxwell maxwell 14.0 Linux 7/20/2017 1/20/2018
maven maven 3.1.0, 3.1.1 Linux 7/20/2017 1/20/2018
materialsstudio materialsstudio 6.1-gateway Linux 7/20/2017 1/20/2018
maker maker 2.28-beta Linux 7/20/2017 1/20/2018
magma magma 1.1.0 Linux 7/20/2017 1/20/2018
LAMMPS lammps

4Dec11/linux, 28Jun14/intel2013-update5-impi-mkl,

 24Apr13/intel2013-update3-impi-mkl

Linux 7/20/2017 1/20/2018
Jellyfish jellyfish 1.1.6 Linux 7/24/2017 1/24/2018
Ilog ilog academic Linux 7/24/2017 1/24/2018
IGV igv 2.0 Linux 7/24/2017 1/24/2018
IDL idl 7.0.6 Linux 7/24/2017 1/24/2018
Hyperworks hyperworks 10.0 Linux 7/24/2017 1/24/2018
Hypermesh hypermesh 10.0 Linux 7/24/2017 1/24/2018
Huygens huygens 15.10.1, 16.05.0, 16.05.1 Linux 7/24/2017 1/24/2018
HKL2000 hkl2000 703g, 704x, 704y Linux 7/24/2017 1/24/2018
hisat2 hisat2 2.0.1 Linux 7/24/2017 1/24/2018
GTS gts 0.7.6 Linux 7/24/2017 1/24/2018
GROMACS gromacs

3.3.3-ompi-double, 3.3.3-ompi-single, 

3.3.3-pmpi-double, 3.3.3-pmpi-single, 4.0.7-ompi-double, 

4.0.7-pmpi-double, 4.5.1-ompi-single, 4.5.1-pmpi-double, 

4.5.3-pmpi-double, 4.5.4-pmpi-double, 

4.5.4-pmpi-single, 4.5.5-pmpi-double

Linux 7/24/2017 1/24/2018
DNASTAR Lasergene - 10, 11 Windows 7/26/2017 1/26/2018
Gaussian gaussian

g09.c01_2, g09.c01.mngfm62, 

g09.a02.mngsm2011.mngfm51, 

g09.a02.mngsm2011, g09.a02.mngfm51

Linux 7/26/2017 1/26/2018
GATK gatk 2.1.13, 2.2.16, 2.3.4, 2.3.9, 2.4.3, 2.5.2 Linux 7/26/2017 1/26/2018
GAMESS gamess

may_09_impi, may09, march_2010_ompi,

march_2010

Linux 7/26/2017 1/26/2018
fsl fsl 4.0.1, 5.0.6_cuda5.5 Linux 7/26/2017 1/26/2018
ffpmeg ffpmeg 20120523 Linux 7/31/2017 1/31/2018
febio febio 1.5.0 Linux 7/31/2017 1/31/2018
fdtd fdtd 8.7.3 Linux 7/31/2017 1/31/2018
FastQC fastqc 0.11.5 Linux 7/31/2017 1/31/2018
espresso espresso 4.1.2 Linux 7/31/2017 1/31/2018
esmf esmf 5.2.0 Linux 7/31/2017 1/31/2018
eigen eigen 3.1.3, 3.1.4, 3.2.4 Linux 7/31/2017 1/31/2018
dolfin dolfin 0.9.7 Linux 7/31/2017 1/31/2018
Desmond desmond 2013.3, 2.4.2.1 Linux 7/31/2017 1/31/2018
cutadapt cutadapt 1.0, 1.5 Linux 7/31/2017 1/31/2018
cufflinks cufflinks 1.3.0, 2.0.1, 2.0.2 Linux 7/31/2017 1/31/2018
Dock dock 6.3 Linux 7/31/2017 1/31/2018
falcon falcon 0.3, 0.7, 1.8.6 Linux 7/31/2017 1/31/2018
Avizo avizo 6.1.1, 6.3.1, 7.0, 7.1.1, 8.0, 8.0.1, 8.1.1 Linux 8/3/2017 2/3/2018
Freesurfer freesurfer 4.5.0, 4.5.0_2, 5.0.0, 5.1.0, 5.2.0 Linux 8/3/2017 2/3/2018
CP2K cp2k oct_11_2010 Linux 8/3/2017 2/3/2018
Consed consed 22.0, 25.0, 26.0 Linux 8/3/2017 2/3/2018
COMSOL comsol

4.2.0.228-research, 4.2.1.166-research, 4.3a,

4.4.0.248

Linux 8/3/2017 2/3/2018
cfitsio cfitsio 3.340 Linux 8/3/2017 2/3/2018
CDO cdo 1.5.3 Linux 8/3/2017 2/3/2018
CCP4 ccp4 6.1.3, 6.2.0, 6.3.0 Linux 8/3/2017 2/3/2018
freebayes Freebayes 20130712 Linux 8/3/2017 2/3/2018
BWA bwa 0.6.1 Linux 8/4/2017 2/4/2018
BreSeq breseq 0.24 Linux 8/4/2017 2/4/2018
Bowtie bowtie

0.12.5, 0.12.7, 0.12.8, 0.12.9, 1.0.0, 2.0.6,

2.2.1

Linux 8/4/2017 2/4/2018
BLASR blasr 20140905 Linux 8/4/2017 2/4/2018
Bioperl-samtools bioperl-samtools 1.37, 1.37_perl-5.16.1 Linux 8/4/2017 2/4/2018
BEAST beast 1.7.4 Linux 8/4/2017 2/4/2018
Augustus augustus 2.5.5 Linux 8/4/2017 2/4/2018
Artemis artemis 12.0 Linux 8/4/2017 2/4/2018
Ansys ansys cargill/v130, cargill/v135, cargill/v160 Linux 8/4/2017 2/4/2018
Analyze analyze 10.0 Linux 8/4/2017 2/4/2018
AMPL ampl

20120507, 20130130, 20130917, 20131018,

20140409, 20150129, 20150214, netlib

Linux 8/7/2017 2/7/2018
Amber amber 11.19-AT1.5.25-Intel12.1-OMPI-CentOS6 Linux 8/7/2017 2/7/2018
Allinea Tools allinea-tools 4.0-31135, 4.1-32296 Linux 8/7/2017 2/7/2018
AFNI afni AFNI_2011_12_21_1014 Linux 8/7/2017 2/7/2018
Abyss abyss 1.3.3, 1.3.4, 1.3.6, 1.5.2 Linux 8/7/2017 2/7/2018
Abokia Blast abokia-blast

2.0.2-130630/ompi_intel, 

2.0.2-130524/ompi_intel

Linux 8/7/2017 2/7/2018
Gromacs gromacs gromacs/4.0.7-ompi-single 
gromacs/4.5.1-pmpi-single          
gromacs/4.5.3-pmpi-single          
gromacs/4.5.5-pmpi-single          
gromacs/4.0.7-pmpi-single  
gromacs/4.5.1-ompi-double         
gromacs/4.5.5-ompi-double
gromacs/5.0.0
Linux 10/5/2017 4/5/2018