Why is [module] no longer available?

MSI tracks the utilization of the software modules installed on our systems. When a module has not been utilized in more than a year, it becomes a candidate for decommissioning and removal from our systems. Once a candidate for decommissioning has been identified, access to that software will be turned off, but the software will remain on our systems. If no reason to re-enable the candidate emerges within six months, the software will then be removed from MSI systems. Below you will find a current list of software slated for decommissioning. The listed software is currently disabled for users, and will be removed from our systems on the indicated removal date.

 

Please contact help@msi.umn.edu if you believe a piece of software has been included on this list in error, or if you need a listed piece of software for your research.

 

 

Software Name Module Name Version(s)    Platform Deactivation Date Removal Date
Yet Another JSON Library yajl 2.0.1 Linux 2/13/2017 8/10/2017
XPLOR-NIH xplor 2.24, 2.32 Linux 2/13/2017 8/10/2017
XEASY xeasy 6.4 Linux 2/13/2017 8/10/2017
Xaim xaim 1.0 Linux 2/13/2017 8/10/2017
Wireshark wireshark 1.6.5 Linux 2/13/2017 8/10/2017
WebLogo weblogo 3.0 Linux 2/13/2017 8/10/2017
WARPLab warplab 1.8.2 Linux 2/13/2017 8/10/2017
Visual Python Profiler vprof 4.2.1 Linux 2/13/2017 8/10/2017
ViennaRNA viennarna 1.8.5, 2.0.7 Linux 2/13/2017 8/10/2017
VICUNA vicuna 1.3 Linux 2/13/2017 8/10/2017
CoreBio corebio

0.5.0

Linux 2/13/2017 8/10/2017
Unified Form Language ufl 1.3.0 Linux 2/20/2017 8/18/2017
Unified Form-assembly Code ufc 1.4.0, 2.0.2, 2.3.2 Linux 2/20/2017 8/18/2017
treePL treepl 20140718 Linux 2/20/2017 8/18/2017
Trans-ABySS trans-abyss 1.44, 1.5.3 Linux 2/20/2017 8/18/2017
tophatstats tophatstats 20120611 Linux 2/20/2017 8/18/2017
TeXinfo texinfo 6.3 Linux 2/20/2017 8/18/2017
Tesseract tesseract 3.01 Linux 2/20/2017 8/18/2017
Tuning and Analysis Utilities TAU 2.22-p1 Linux 2/20/2017 8/18/2017
TagRecon tagrecon 1.4.71 Linux 2/20/2017 8/18/2017
SW4 sw4 1.0.0 Linux 2/20/2017 8/18/2017
Stan stan 1.0.2 Linux 2/20/2017 8/18/2017
SPM8 spm8 8.0 Linux 2/20/2017 8/18/2017
Solve solve 2.13 Linux 2/20/2017 8/18/2017
SimNIBS simnibs 1.1 Linux 2/20/2017 8/18/2017
SHRiMP shrimp 2.2.3 Linux 2/20/2017 8/18/2017
SeqPig seqpig 0.5 Linux 2/20/2017 8/18/2017
SciTE scite 3.3.4 Linux 2/20/2017 8/18/2017
ScalaBLAST scalablast 2.4.53 Linux 2/20/2017 8/18/2017
Ruffus ruffus 20120611 Linux 3/28/2017 9/28/2017
Rose rose 0.9.5a-20584 Linux 3/28/2017 9/28/2017
RNAz rnaz 2.1 Linux 3/28/2017 9/28/2017
RNAshapes rnashapes 2.1.6 Linux 3/28/2017 9/28/2017
Rasdaman rasdaman 9.0.5 Linux 3/28/2017 9/28/2017
Radiance radiance 4.0 Linux 3/28/2017 9/28/2017
QMPI qmpi intel Linux 3/28/2017 9/28/2017
PySQLite pysqlite 2.6.3 Linux 3/28/2017 9/28/2017
PyRx pyrx 0.9 Linux 3/28/2017 9/28/2017
ProFit profit 3.1 Linux 3/28/2017 9/28/2017
Prody prody 1.4.2 Linux 3/28/2017 9/28/2017
Procheck procheck 3.5.4 Linux 3/28/2017 9/28/2017
POVscript povscript 2.1.2 Linux 3/28/2017 9/28/2017
PolyPhred polyphred 6.18 Linux 3/28/2017 9/28/2017
phd2FASTA phd2fasta 0.990622 Linux 3/28/2017 9/28/2017
PCL pcl 1.6.0 Linux 3/28/2017 9/28/2017
Paralution paralution 0.4.0 Linux 3/28/2017 9/28/2017
Paracel-BLAST paracel-blast 1.9.0-1 Linux 3/28/2017 9/28/2017
odccm odccm 0.11 Linux 3/28/2017 9/28/2017
Novoalign novoalign 2.07, 2.07.mpi, 2.08.02 Linux 3/28/2017 9/28/2017
NMRView nmrview 8.0 Linux 3/28/2017 9/28/2017
netpbm netpbm 10.35.94 Linux 3/28/2017 9/28/2017
netcdf3 netcdf3 3.6.3 Linux 3/30/2017 9/30/2017
n3 n3 1.12 Linux 3/30/2017 9/30/2017
ImageJ - - Windows 4/4/2017 10/4/2017
MZmine - - Windows 4/4/2017 10/4/2017
Quake quake 0.3.4 Linux 4/11/2017 10/11/2017
MyriMatch myrimatch 2.1.138 Linux 4/19/2017 10/19/2017
MOLMOL molmol 2.6.0 Linux 4/19/2017 10/19/2017
lab versions of R R 3.0.3, 3.1.0, 3.1.1 Linux 5/11/2017 11/11/2017
mgltools mgltools 1.56rc3 Linux 6/20/2017 12/20/2017
metavelvet metavelvet 1.2 Linux 6/20/2017 12/20/2017
meraculous meraculous 1.4.4 Linux 6/20/2017 12/20/2017
masurca masurca 2.2.1 Linux 6/20/2017 12/20/2017
maq maq 0.7.1 Linux 6/20/2017 12/20/2017
magick++ magick++ 6.7.7 Linux 6/20/2017 12/20/2017
lumpy lumpy 0.1.6 Linux 6/20/2017 12/20/2017
locarna locarna 1.7.2 Linux 6/20/2017 12/20/2017
lanl-trace lanl-trace 1.0.0 Linux 6/20/2017 12/20/2017
instant instant 1.3.0 Linux 6/20/2017 12/20/2017
infernal infernal 1.1rc2 Linux 6/20/2017 12/20/2017
help2man help2man 1.43.3 Linux 6/20/2017 12/20/2017
haddock haddock 2.1 Linux 6/20/2017 12/20/2017
guile guile 2.0.11 Linux 6/20/2017 12/20/2017
grass grass 7.0.0 Linux 6/20/2017 12/20/2017
graphclust graphclust 0.7.2 Linux 6/20/2017 12/20/2017
goby goby 1.9.7.3 Linux 6/20/2017 12/20/2017
gmt gmt 4.5.6 Linux 6/20/2017 12/20/2017
glimmer-mg glimmer-mg 0.3.1 Linux 6/20/2017 12/20/2017
giraph giraph 1.0.0 Linux 6/20/2017 12/20/2017
ghostm ghostm 1.2 Linux 6/21/2017 12/21/2017
genscan genscan 1.0 Linux 6/21/2017 12/21/2017
genehunter genehunter 2.1r2 Linux 6/21/2017 12/21/2017
gcg gcg 11.0.1 Linux 6/21/2017 12/21/2017
gatoolkit gatoolkit 5.0.2 Linux 6/21/2017 12/21/2017
fwdpp fwdpp 0.2.2 Linux 6/21/2017 12/21/2017
fire fire 1.1a Linux 6/21/2017 12/21/2017
fiat fiat 1.3.0 Linux 6/21/2017 12/21/2017
ffc ffc 1.3.0 Linux 6/21/2017 12/21/2017
feko feko 6.1.1 Linux 6/21/2017 12/21/2017
enet enet 1.3.7 Linux 6/21/2017 12/21/2017
ePMV ePMV 0.5 Linux 6/21/2017 12/21/2017
dtrek dtrek 0.9.9.9.4L, 0.9.9.9.6L Linux 6/21/2017 12/21/2017
dssp dssp - Linux 6/21/2017 12/21/2017
dotur dotur 1.53 Linux 6/21/2017 12/21/2017
dot dot - Linux 6/21/2017 12/21/2017
directang directang 1.4.66 Linux 6/21/2017 12/21/2017
dakota dakota 5.0 Linux 6/21/2017 12/21/2017
cppunit cppunit 1.12.1 Linux 6/21/2017 12/21/2017
cobra cobra 2.0.5 Linux 6/21/2017 12/21/2017
cmfinder cmfinder 0.2 Linux 6/22/2017 12/22/2017
clover clover 2011-10-24 Linux 6/22/2017 12/22/2017
chemkin-cfd chemkin-cfd 20112 Linux 6/22/2017 12/22/2017
cg cg 3.1 Linux 6/22/2017 12/22/2017
ccpnmr ccpnmr 2.2.2 Linux 6/22/2017 12/22/2017
casava casava 1.7.0, 1.8.0 Linux 6/22/2017 12/22/2017
cara cara 1.8.4 Linux 6/22/2017 12/22/2017
cadaver cadaver 0.23.3, 0.75 Linux 6/22/2017 12/22/2017
biolearn biolearn 1.0 Linux 6/22/2017 12/22/2017
bioinfo bioinfo - Linux 6/22/2017 12/22/2017
beers beers 20120611 Linux 6/22/2017 12/22/2017
bbcp bbcp - Linux 6/22/2017 12/22/2017
art art 4.02.2013 Linux 6/22/2017 12/22/2017
aqua aqua 3.2 Linux 6/22/2017 12/22/2017
analysis analysis 0.8.1, 0.8.4 Linux 6/22/2017 12/22/2017
aces aces III Linux 6/22/2017 12/22/2017
accumulo accumulo 1.4.4 Linux 6/22/2017 12/22/2017
vlc vlc 2.0.1 Linux 7/13/2017 1/13/2018
visit visit 2.3.2 Linux 7/13/2017 1/13/2018
velvet velvet 1.2.10, 1.2.07 Linux 7/13/2017 1/13/2018
usearch usearch 5.2 Linux 7/13/2017 1/13/2018
unrar unrar 2.71 Linux 7/13/2017 1/13/2018
turbomole turbomole 6.4, 6.3.1, 5.10.2 Linux 7/13/2017 1/13/2018
trinityrnaseq trinityrnaseq

2.0.6, 20140413, 20131110, 20130814,

20121005, 20120608, 20120317,

20110820, 20110519

Linux 7/13/2017 1/13/2018
totalview totalview 8.8.0-1 Linux 7/14/2017 1/14/2018
tophat tophat

2.0.0, 2.0.1, 2.0.3, 2.0.4,

2.0.5, 2.0.6, 2.0.7, 2.0.7, 2.0.8, 2.0.9

Linux 7/14/2017 1/14/2018
texlive texlive 2012 Linux 7/14/2017 1/14/2018
Sybyl-X sybyl, sybyl/x, sybyl-x 2.1.1, 2.1, 1.1.083, 8.0 Linux 7/14/2017 1/14/2018
Swig swig 1.3.40, 2.0.4 Linux 7/17/2017 1/17/2018
Star-CCM star-ccm 6.02.009_04, 6.02.007_01, 5.06.010_02 Linux 7/17/2017 1/17/2018
SparseHash sparsehash 2.0.2 Linux 7/17/2017 1/17/2018
Spark spark 1.3.0 Linux 7/17/2017 1/17/2018
SGA sga 20120608 Linux 7/17/2017 1/17/2018
RStudio rstudio 0.96.331 Linux 7/17/2017 1/17/2018
RepeatMasker repeatmasker 3.3.0 Linux 7/17/2017 1/17/2018
QChem qchem 3.1_serial, 3.1_parallel, 3.2_serial, 3.2_parallel Linux 7/17/2017 1/17/2018
Pyton-EPD python-epd 1.0.3, 1.1.0 Linux 7/17/2017 1/17/2018
PyMol pymol 1.5, 1.6 Linux 7/17/2017 1/17/2018
ProJ proj 4.9.2 Linux 7/17/2017 1/17/2018
Prodigal prodigal 2.6.3 Linux 7/18/2017 1/18/2018
Primer3 primer3 2.2.3 Linux 7/18/2017 1/18/2018
Pig pig 0.8.1 Linux 7/18/2017 1/18/2018
Picard picard 1.68 Linux 7/18/2017 1/18/2018
Picard Tools picard-tools 1.126 Linux 7/18/2017 1/18/2018
phred phred 0.071220-beta Linux 7/18/2017 1/18/2018
phrap phrap 1.090518 Linux 7/18/2017 1/18/2018
phenix phenix 1.9.2-1692, 1.0-1692, 1.8.1-1168, 1.7.3-928 Linux 7/18/2017 1/18/2018
petsc petsc 3.2.7, 3.4.4, 3.4.5, 3.4.5_gcc4.9.2_ompi1.8.4 Linux 7/18/2017 1/18/2018
pbsuite pbsuite 14.1, 14.7.14 Linux 7/18/2017 1/18/2018
parmetic parmetis

4.0.3/width64_intel2015update2_ompi1.8.4,

4.0.3/width64_gcc4.9.2_ompi1.8.4, 

4.0.3/width32_intel2015update2_ompi1.8.4,

4.0.3/width32_gcc4.9.2_ompi1.8.4,

 4.0.3/int32real64_intel2015update2_ompi1.8.4

Linux 7/18/2017 1/18/2018
pandaseq pandaseq 2.4 Linux 7/19/2017 1/19/2018
paml paml 4.5 Linux 7/19/2017 1/19/2018
ORCA orca 2.7.0, 2.8.0, 2.9.0, 3.0.2 Linux 7/19/2017 1/19/2018
openeye openeye 20120503 Linux 7/19/2017 1/19/2018
Oases oases 0.1.22SB, 0.1.22 Linux 7/19/2017 1/19/2018
nwchem nwchem 6.11_pmpi_8.0.1 Linux 7/19/2017 1/19/2018
nvbio nvbio 0.9.9 Linux 7/19/2017 1/19/2018
ncview ncview ncview212 Linux 7/19/2017 1/19/2018
ncbi_blast ncbi_blast 2.2.27 Linux 7/19/2017 1/19/2018
NAMD namd

2.7b3, 2.7b4-opmi,

2.8b1-libverbs, 2.9-20120430-intel-verbs,

2.9b2-libverbs-CUDA

Linux 7/19/2017 1/19/2018
mumps mumps 5.0.0/intel2015update2_impi5.0.3.048 Linux 7/19/2017 1/19/2018
mothur mothur 1.21.1, 1.23.1_ompi1.4.4, 1.25.1, 1.27.0_ompi1.4.4 Linux 7/19/2017 1/19/2018
molpro molpro 2012.1.large_domain, 2012.1.8 Linux 7/20/2017 1/20/2018
MOE moe 2010.10, 2011.10 Linux 7/20/2017 1/20/2018
mira mira 3.4.0, 4.0rc4 Linux 7/20/2017 1/20/2018
metis metis

5.1.0/width64_gcc4.9.2, 

5.1.0/width32_intel2015update2, 

5.1.0/width32_gcc4.9.2, 

5.1.0/int32real64_gcc4.9.2

Linux 7/20/2017 1/20/2018
metagenomicsQC metagenomicsQC 1.0 Linux 7/20/2017 1/20/2018
MEGAN megan 20120612 Linux 7/20/2017 1/20/2018
Maxwell maxwell 14.0 Linux 7/20/2017 1/20/2018
maven maven 3.1.0, 3.1.1 Linux 7/20/2017 1/20/2018
materialsstudio materialsstudio 6.1-gateway Linux 7/20/2017 1/20/2018
maker maker 2.28-beta Linux 7/20/2017 1/20/2018
magma magma 1.1.0 Linux 7/20/2017 1/20/2018
LAMMPS lammps

4Dec11/linux, 28Jun14/intel2013-update5-impi-mkl,

 24Apr13/intel2013-update3-impi-mkl

Linux 7/20/2017 1/20/2018
Jellyfish jellyfish 1.1.6 Linux 7/24/2017 1/24/2018
Ilog ilog academic Linux 7/24/2017 1/24/2018
IGV igv 2.0 Linux 7/24/2017 1/24/2018
IDL idl 7.0.6 Linux 7/24/2017 1/24/2018
Hyperworks hyperworks 10.0 Linux 7/24/2017 1/24/2018
Hypermesh hypermesh 10.0 Linux 7/24/2017 1/24/2018
Huygens huygens 15.10.1, 16.05.0, 16.05.1 Linux 7/24/2017 1/24/2018
HKL2000 hkl2000 703g, 704x, 704y Linux 7/24/2017 1/24/2018
hisat2 hisat2 2.0.1 Linux 7/24/2017 1/24/2018
GTS gts 0.7.6 Linux 7/24/2017 1/24/2018
GROMACS gromacs

3.3.3-ompi-double, 3.3.3-ompi-single, 

3.3.3-pmpi-double, 3.3.3-pmpi-single, 4.0.7-ompi-double, 

4.0.7-pmpi-double, 4.5.1-ompi-single, 4.5.1-pmpi-double, 

4.5.3-pmpi-double, 4.5.4-pmpi-double, 

4.5.4-pmpi-single, 4.5.5-pmpi-double

Linux 7/24/2017 1/24/2018
DNASTAR Lasergene - 10, 11 Windows 7/26/2017 1/26/2018
Gaussian gaussian

g09.c01_2, g09.c01.mngfm62, 

g09.a02.mngsm2011.mngfm51, 

g09.a02.mngsm2011, g09.a02.mngfm51

Linux 7/26/2017 1/26/2018
GATK gatk 2.1.13, 2.2.16, 2.3.4, 2.3.9, 2.4.3, 2.5.2 Linux 7/26/2017 1/26/2018
GAMESS gamess

may_09_impi, may09, march_2010_ompi,

march_2010

Linux 7/26/2017 1/26/2018
fsl fsl 4.0.1, 5.0.6_cuda5.5 Linux 7/26/2017 1/26/2018
ffpmeg ffpmeg 20120523 Linux 7/31/2017 1/31/2018
febio febio 1.5.0 Linux 7/31/2017 1/31/2018
fdtd fdtd 8.7.3 Linux 7/31/2017 1/31/2018
FastQC fastqc 0.11.5 Linux 7/31/2017 1/31/2018
espresso espresso 4.1.2 Linux 7/31/2017 1/31/2018
esmf esmf 5.2.0 Linux 7/31/2017 1/31/2018
eigen eigen 3.1.3, 3.1.4, 3.2.4 Linux 7/31/2017 1/31/2018
dolfin dolfin 0.9.7 Linux 7/31/2017 1/31/2018
Desmond desmond 2013.3, 2.4.2.1 Linux 7/31/2017 1/31/2018
cutadapt cutadapt 1.0, 1.5 Linux 7/31/2017 1/31/2018
cufflinks cufflinks 1.3.0, 2.0.1, 2.0.2 Linux 7/31/2017 1/31/2018
Dock dock 6.3 Linux 7/31/2017 1/31/2018
falcon falcon 0.3, 0.7, 1.8.6 Linux 7/31/2017 1/31/2018
Avizo avizo 6.1.1, 6.3.1, 7.0, 7.1.1, 8.0, 8.0.1, 8.1.1 Linux 8/3/2017 2/3/2018
Freesurfer freesurfer 4.5.0, 4.5.0_2, 5.0.0, 5.1.0, 5.2.0 Linux 8/3/2017 2/3/2018
CP2K cp2k oct_11_2010 Linux 8/3/2017 2/3/2018
Consed consed 22.0, 25.0, 26.0 Linux 8/3/2017 2/3/2018
COMSOL comsol

4.2.0.228-research, 4.2.1.166-research, 4.3a,

4.4.0.248

Linux 8/3/2017 2/3/2018
cfitsio cfitsio 3.340 Linux 8/3/2017 2/3/2018
CDO cdo 1.5.3 Linux 8/3/2017 2/3/2018
CCP4 ccp4 6.1.3, 6.2.0, 6.3.0 Linux 8/3/2017 2/3/2018
freebayes Freebayes 20130712 Linux 8/3/2017 2/3/2018
BWA bwa 0.6.1 Linux 8/4/2017 2/4/2018
BreSeq breseq 0.24 Linux 8/4/2017 2/4/2018
Bowtie bowtie

0.12.5, 0.12.7, 0.12.8, 0.12.9, 1.0.0, 2.0.6,

2.2.1

Linux 8/4/2017 2/4/2018
BLASR blasr 20140905 Linux 8/4/2017 2/4/2018
Bioperl-samtools bioperl-samtools 1.37, 1.37_perl-5.16.1 Linux 8/4/2017 2/4/2018
BEAST beast 1.7.4 Linux 8/4/2017 2/4/2018
Augustus augustus 2.5.5 Linux 8/4/2017 2/4/2018
Artemis artemis 12.0 Linux 8/4/2017 2/4/2018
Ansys ansys cargill/v130, cargill/v135, cargill/v160 Linux 8/4/2017 2/4/2018
Analyze analyze 10.0 Linux 8/4/2017 2/4/2018
AMPL ampl

20120507, 20130130, 20130917, 20131018,

20140409, 20150129, 20150214, netlib

Linux 8/7/2017 2/7/2018
Amber amber 11.19-AT1.5.25-Intel12.1-OMPI-CentOS6 Linux 8/7/2017 2/7/2018
Allinea Tools allinea-tools 4.0-31135, 4.1-32296 Linux 8/7/2017 2/7/2018
AFNI afni AFNI_2011_12_21_1014 Linux 8/7/2017 2/7/2018
Abyss abyss 1.3.3, 1.3.4, 1.3.6, 1.5.2 Linux 8/7/2017 2/7/2018
Abokia Blast abokia-blast

2.0.2-130630/ompi_intel, 

2.0.2-130524/ompi_intel

Linux 8/7/2017 2/7/2018
Gromacs gromacs gromacs/4.0.7-ompi-single 
gromacs/4.5.1-pmpi-single          
gromacs/4.5.3-pmpi-single          
gromacs/4.5.5-pmpi-single          
gromacs/4.0.7-pmpi-single  
gromacs/4.5.1-ompi-double         
gromacs/4.5.5-ompi-double
gromacs/5.0.0
Linux 10/5/2017 4/5/2017