Biolearn

Biolearn is a general package for applying probabilistic graphical models to biological applications. Biolearn release 1.0 is concentrated on structure learning for bayesian networks; future releases are expected to include other types of graphical models, support inference applications, and allow plug-and-play addition of new types of probability distributions, scoring functions and search algorithms.

To run this software interactively on the lab cluster:

module load biolearn
BiolearnInteractiveRun.sh <specification file>

The specification file is optional. If it is not present, a file open dialiog box will open and you can browse for a specification file

The Biolearn user manual is available at http://www.c2b2.columbia.edu/danapeerlab/html/Biolearn1.0usermanual.pdf

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