Software Summary


Default Module: 
Other Versions Available: 
Last Updated On: 
Last Updated On: 

Thursday, June 6, 2013

Support Level: 
Secondary Support
Software Access Level: 
Limited Licenses
Software Categories: 
Software Description
Software Description: 

ProteinPilot™ Software can perform protein identification and quantitation, along with prediction of hundreds of peptide modifications and non-tryptic cleavages simultaneously. The protein grouping algorithm helps in distinguishing protein isoforms and visualize peptide-protein associations and relationships. The new version can take in generic input for non-AB SCIEX instruments via .mgf format. Other features include : Automatic and Rigorous False Discovery Rate (FDR) Analysis; Improved Quantitation for iTRAQ Reagent-Based Workflows; Speed and Scalability Improvements; Extended Gel Workflow Support; Open Control of Parameter Settings; Extended Support for Instruments from Other Vendors; Improved Identification Quality; Command Line Control and Open Results.

Currently, MSI has only one ProteinPilot license. We ask that all users use the calendaring program to sign up for time on ProteinPilot. Please specify your name on the calendar. Prior to using the calendar for the first time please email to request access to the ProteinPilot calendar. Please limit your ProteinPilot reservation to less than 24 hours at a time. If you need additional time after your 24 hour session has ended and the license is not reserved you may reserve another 24 hour session.  If you are not able to reserve time on the calendar please email

You can use the following links to see the ProteinPilot calendar and reserve the license: ProteinPilot Calendar

Follow the instructions at to add a reservation to the calendar.


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