Tophat

Software Summary

Mesabi

Default Module: 

2.0.13

Other Modules Available: 

1.4.1, 2.0.10, 2.0.11, 2.0.12, 2.0.13, 2.1.1

Last Updated On: 

Wednesday, January 25, 2017

Itasca

Default Module: 

2.0.13

Other Modules Available: 

1.4.1, 2.0.10, 2.0.11, 2.0.12, 2.0.13, 2.1.1

Last Updated On: 

Wednesday, January 25, 2017

Lab

Default Module: 

2.0.13

Other Versions Available: 

1.4.1, 2.0.10, 2.0.11, 2.0.12, 2.0.13, 2.1.1

Last Updated On: 

Wednesday, January 25, 2017

Last Updated On: 

Wednesday, January 25, 2017

Support Level: 
Secondary Support
Software Access Level: 
Open Access
Software Categories: 
Genetics
Software Description
Software Description: 

In Galaxy TopHat has been replaced with HiSat or HiSat2.

When following Galaxy tutorials replace TopHat commands with HiSat or HiSat2. TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.

Software Documentation

Software Documentation Tabs