amos
Software Description
AMOS is collection of tools and class interfaces for the assembly of DNA sequencing reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contiging, and assembly manipulation. AMOS is composed of a number of modules, each of which performs a step in the assembly process. While each module can be run individually, AMOS provides a module that controls the entire pipeline assembly, called runAmos.
Info
Module Name
amos
Last Updated On
08/29/2023
Support Level
Secondary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
AMOS is collection of tools and class interfaces for the assembly of DNA sequencing reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contiging, and assembly manipulation. AMOS is composed of a number of modules, each of which performs a step in the assembly process. While each module can be run individually, AMOS provides a module that controls the entire pipeline assembly, called runAmos.
General Linux
To load this module for use in a Linux environment, you can run the command:
module load amos
Depending on where you are working, there may be more than one version of amos available. To see which modules are available for loading you can run:
module avail amos
Agate Modules
Default
3.1.0-conda
Other Modules
3.1.0, 3.1.0-conda
Mangi Modules
Default
3.1.0-conda
Other Modules
3.1.0, 3.1.0-conda
Mesabi Modules
Default
3.1.0-conda
Other Modules
3.1.0, 3.1.0-conda