Minnesota Supercomputing Institute
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Wednesday, December 7, 2016
AMOS is collection of tools and class interfaces for the assembly of DNA sequencing reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contiging, and assembly manipulation. AMOS is composed of a number of modules, each of which performs a step in the assembly process. While each module can be run individually, AMOS provides a module that controls the entire pipeline assembly, called runAmos.
module load amos
runAmos [options] -c <config>