AMOS

AMOS is collection of tools and class interfaces for the assembly of DNA sequencing reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contiging, and assembly manipulation. AMOS is composed of a number of modules, each of which performs a step in the assembly process. While each module can be run individually, AMOS provides a module that controls the entire pipeline assembly, called runAmos.