AutoDock is a suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure.
To run Autdock commands (i.e., the CLI) interactively in a Linux environment run the commands:
module load autodock autodock4 -p filename or autogrid4 -p filename
To run AutoDock Tools (GUI) interactively in a Linux environment run the commands:
module load autodock adt