Minnesota Supercomputing Institute
20120608
20120608, 2.5.1
Monday, July 26, 2021
BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files (SAMtools is a superior SAM/BAM toolkit).
To run this software interactively in a Linux environment run the commands:
module load bamtools bamtools
#!/bin/bash #SBATCH --job-name="rfm_RunBamtoolsTest_job" #SBATCH --ntasks=1 #SBATCH --ntasks-per-node=1 #SBATCH --output=rfm_RunBamtoolsTest_job.out #SBATCH --error=rfm_RunBamtoolsTest_job.err #SBATCH --time=0:10:0 #SBATCH -p small,large,ram256g,ram1t module load bamtools/20120608 bamtools stats -in out.bam