Minnesota Supercomputing Institute
With regards to the safety measures put in place by the university to mitigate the risks of the COVID-19 virus, at this time all MSI systems will remain operational and can be accessed remotely as usual. The only planned outages concern our in-person Helpdesk and tutorials. More information, as well as alternative remote support options, can be found at MSI COVID-19 Continuity Plan
Thursday, March 1, 2018
BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files (SAMtools is a superior SAM/BAM toolkit).
To run this software interactively in a Linux environment run the commands:
module load bamtools