BEDTools

Search Software

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by "streaming" several BEDTools together.

SW Documentation: 

To run this software interactively in a Linux environment run the commands:

module load bedtools  

bedtools

A PDF users manual for usage can be found here

Short Name: 
bedtools
SW Module: 
bedtools
Service Level: 
Minimal
SW Category: