BEDTools

Software Summary

Mesabi

Default Module: 

2.25.0

Other Modules Available: 

2.17.0, 2.25.0, 2.27.1

Last Updated On: 

Monday, March 26, 2018

Itasca

Default Module: 

2.25.0

Other Modules Available: 

2.17.0, 2.25.0, 2.27.1

Last Updated On: 

Monday, March 26, 2018

Lab

Default Module: 

2.25.0

Other Versions Available: 

2.17.0, 2.25.0, 2.27.1

Last Updated On: 

Monday, March 26, 2018

Last Updated On: 

Monday, March 26, 2018

Support Level: 
Minimal Support
Software Access Level: 
Open Access
Software Categories: 
Genetics
Software Description
Software Description: 

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by "streaming" several BEDTools together.

Software Documentation

Software Documentation Tabs