BLAT, the BLAST-like alignment tool, is a DNA/Protein Sequence Analysis program. It is designed to quickly find sequences of 95% and greater similarity of length 40 bases or more.
To run this software interactively in a Linux environment run the commands:
module load blat
blat <database> <query> <output.psl>
For documentation, run the blat command without any parameters, or see the BLAT homepage.
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