Minnesota Supercomputing Institute
2.2.4_gcc-4.9.2_haswell
2.2.4_gcc-4.9.2_haswell, 2.3.4.1.CentOS7, 2.3.4.1, 1.1.2, 2.2.2, 2.2.4, 2.1.0, 2.3.0, 2.4.4, 2.3.2, 2.3.1
Friday, May 19, 2023
2.3.4.1.CentOS7, 2.3.4.1, 1.1.2, 2.2.2, 2.2.4, 2.1.0, 2.3.0, 2.4.4, 2.3.2, 2.3.1
2.3.4.1
2.3.4.1, 1.1.2, 2.2.2, 2.2.4, 2.1.0, 2.3.0, 2.4.4, 2.3.2, 2.3.1
To load this software in a Linux environment run the commands:
module load bowtie2
#!/bin/bash #SBATCH --job-name="rfm_RunBowtie2Test_job" #SBATCH --ntasks=1 #SBATCH --ntasks-per-node=1 #SBATCH --output=rfm_RunBowtie2Test_job.out #SBATCH --error=rfm_RunBowtie2Test_job.err #SBATCH --time=0:10:0 #SBATCH -p small,large,ram256g,ram1t module load bowtie2/2.3.4.1 wget https://public.s3.msi.umn.edu/reframe/sw/bwa/sample.fq wget https://public.s3.msi.umn.edu/reframe/sw/bwa/ref.fasta bowtie2-build ref.fasta ref bowtie2 -x ref sample.fq -S sample.sam