Minnesota Supercomputing Institute
With regards to the safety measures put in place by the university to mitigate the risks of the COVID-19 virus, at this time all MSI systems will remain operational and can be accessed remotely as usual. The only planned outages concern our in-person Helpdesk and tutorials. More information, as well as alternative remote support options, can be found at MSI COVID-19 Continuity Plan
Thursday, June 28, 2018
BRAKER1 is software for unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS.
To run this software interactively in a Linux Environment run the commands:
module load braker1
braker.pl [OPTIONS] --genome=genome.fa --species=speciesname --bam=accepted_hits.bam
For a list of all options use the command: