breseq

Software Summary

Mesabi

Default Module: 

0.28

Other Modules Available: 

0.26, 0.28, 0.28.1, 0.35.0

Last Updated On: 

Thursday, February 27, 2020

Mesabi K40

Default Module: 

0.28
Other Modules Available: 

0.26, 0.28, 0.28.1, 0.35.0

Last Updated On: 

Thursday, February 27, 2020

Mangi

Default Module: 
0.28
Other Modules Available: 

0.26, 0.28, 0.28.1, 0.35.0

Last Updated On: 

Thursday, February 27, 2020

Mangi v100

Default Module: 

0.28
Other Modules Available: 

0.26, 0.28, 0.28.1, 0.35.0

Last Updated On: 

Thursday, February 27, 2020

NICE

Default Module: 

0.28

Other Versions Available: 

0.26, 0.28, 0.28.1, 0.35.0

Last Updated On: 

Thursday, February 27, 2020

Last Updated On: 

Thursday, February 27, 2020

Support Level: 
Secondary Support
Software Access Level: 
Open Access
Software Categories: 
Genetics
Software Description

From the breseq manual pages:

breseq (pronounced: breeze-seq) is a computational pipeline for the analysis of short-read re-sequencing data (e.g. 454, Illumina, SOLiD, etc.).
 
It uses reference-based alignment approaches to predict mutations in a sample relative to an already sequenced genome. breseq is intended for microbial genomes (<10 Mb) and re-sequenced samples that are only slightly diverged from the reference sequence (<1 mutation per 1000 bp).
 
breseq‘s primary advantages over other existing software programs are that it can:
Predict new sequence junctions, such as those associated with mobile element insertions, from single-end read data.
 
Reliably identify short indel mutations by appropriately masking the ends of read alignments.
Produce annotated output describing biologically relevant mutational events.
breseq is available on the lab cluster.
 

 

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