BWA

Software Summary

Mesabi

Default Module: 

0.7.17_gcc-7.2.0_haswell

Other Modules Available: 

0.7.12_gcc-4.9.2_haswell, 0.7.17_gcc-7.2.0_haswell, 0.7.10, 0.5.9, 0.6.2, 0.7.12, 0.7.15, 0.7.4, 0.7.17, 0.7.17.CentOS7

Last Updated On: 

Tuesday, August 14, 2018

Mesabi K40

Default Module: 

0.7.17_gcc-7.2.0_haswell
Other Modules Available: 

0.7.12_gcc-4.9.2_haswell, 0.7.17_gcc-7.2.0_haswell, 0.7.10, 0.5.9, 0.6.2, 0.7.12, 0.7.15, 0.7.4, 0.7.17, 0.7.17.CentOS7

Last Updated On: 

Tuesday, August 14, 2018

Mangi

Default Module: 
0.7.17
Other Modules Available: 

0.7.10, 0.5.9, 0.6.2, 0.7.12, 0.7.15, 0.7.4, 0.7.17, 0.7.17.CentOS7

Last Updated On: 

Tuesday, August 14, 2018

Mangi v100

Default Module: 

0.7.17
Other Modules Available: 

0.7.10, 0.5.9, 0.6.2, 0.7.12, 0.7.15, 0.7.4, 0.7.17, 0.7.17.CentOS7

Last Updated On: 

Tuesday, August 14, 2018

NICE

Default Module: 

0.7.17

Other Versions Available: 

0.7.10, 0.5.9, 0.6.2, 0.7.12, 0.7.15, 0.7.4, 0.7.17

Last Updated On: 

Thursday, August 2, 2018

Last Updated On: 

Tuesday, August 14, 2018

Support Level: 
Primary Support
Software Access Level: 
Open Access
Software Categories: 
Genetics
Software Description

BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support and split alignment, but BWA-MEM, which is the latest, is generally recommended for high-quality queries as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads.

Software Documentation

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