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  • Anaconda is a free Python distribtion from Continuum Analytics.  It is optimized to run cross-platform.  It comes built in with various scientific

  • BioPerl is a toolkit of Perl modules useful for building bioinformatics programs in perl.

  • Read SAM/BAM databases within Bioperl.

  • CUDA, (the Compute Unified Device Architecture), is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce.

  • DAKOTA (Design Analysis Kit for Optimization and Terascale Applications) is a general purpose software toolkit written in C++. It is designed and developed at the Sandia National Laboratories.

  • Python is a high level programming language that aims to combine remarkable power with very clear syntax.

  • RStudio provides open source and enterprise-ready professional software for the R statistical computing environment.