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  • Anaconda is a free Python distribtion from Continuum Analytics.  It is optimized to run cross-platform.  It comes built in with various scientific

  • BioPerl is a toolkit of Perl modules useful for building bioinformatics programs in perl.

  • Read SAM/BAM databases within Bioperl. http://search.cpan.org/~lds/Bio-SamTools/lib/Bio/DB/Sam.pm

  • CUDA, (the Compute Unified Device Architecture), is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce.

  • DAKOTA (Design Analysis Kit for Optimization and Terascale Applications) is a general purpose software toolkit written in C++. It is designed and developed at the Sandia National Laboratories.

  • Python is a high level programming language that aims to combine remarkable power with very clear syntax.

  • Qt

    Qt is a complete C++ application development framework, which includes a class library and tools for cross-platform development and internationalization. The Qt API and tools are consistent across all supported platforms, enabling platform independent application development and deployment.