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  • Anaconda is a free Python distribtion from Continuum Analytics.  It is optimized to run cross-platform.  It comes built in with various scientific

  • Analyze is a comprehensive biomedical imaging software suite for visualization and analysis. It is distributed by AnalyzeDirect, and was developed at Mayo Clinic.

  • A suite of programs that analyze the quality of biomolecular structures determined via NMR spectroscopy. AQUA was initially developed by Ton Rullmann and Jurgen Doreleijersb Bijvoet Center for Biomolecular Research, Utrecht, The Netherlands.

  • Python is a high level programming language that aims to combine remarkable power with very clear syntax.

  • FreeSurfer is a set of automated tools for reconstruction of the brain’s cortical surface from structural MRI data, and overlay of functional MRI data onto the reconstructed surface.

  • The Huygens System is an image processing software package specifically designed to facilitate the restoration of microscopic images. It provides many arithmetic operations on image types ranging from simple 2D images of unsigned bytes to multi-parameter, 3D time series of complex values.

  • ImageJ is a public domain utility for image processing and analysis. It is based on Java and can be extended to create several plugins and develop applications from its toolkit.

  • Imaris suite provides a complete set of features for working with three-dimensional multi-channel images. It allows users to conveniently load, process and visualize images in any widely accepted image format to gain new insight from microscopic data.
  • Matlab is a high level technical computing language and interactive environment for data visualization, data analysis, numerical computation, and algorithm development.

  • Slicer, or 3D Slicer, is a free, open source software package for visualization and image analysis. It includes tools for segmentation, rendering, registration of MRI, CT, US, nuclear medicine, and microscopy images.

  • Volocity is an interactive volume visualization system for time-resolved biomedical image data.. It includes tools for: