Search Software

  • Bioconductor is an open source and open development software project to provide tools for the analysis and comprehension of genomic data.

  • BlueFuse is a powerful software tool for two-channel microarray image analysis. It does automatic grid placement, quantification, spot confidence estimation, and multiple-image batch processing using Bayesian algorithms.

  • GeneData Expressionist is a comprehensive microarray data analysis system. It consists of several closely integrated modules.

  • PathwayStudio is the upgrade version of PathwayAssist software. It can build and examine biological association networks, including traditional pathways. One can see protein, small molecule and cellular processes all together for a more complete systems biology network view.

  • QIIME (canonically pronounced ‘Chime’) is a pipeline for performing microbial community analysis that integrates many third party tools which have become standard in the field. 

     

    For more information on Qiime specific tutorials, please refer to:

  • Spotfire is an interactive, visual data analytics application for any numeric data including microarray data analysis. It is a client-server system. The client is installed on MSI machine or user local machine, and the server is on the spotfire company side. Spotfire was built with many modules.