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Comsol Multiphysics (formerly known as FEMLAB) is a Multiphysics modeling tool that solves all types of problems based on Finite Element Analysis and Partial Differential Equations (PDEs). Predefined applications modes include stress/strain, heat transfer, CFD, and electromagnetics.
GraphClust can be used for structural clustering of RNA sequences. Especially it can be used for clustering of very large dataset with thousands of RNAs.
"RNAshapes offers three powerful RNA analysis tools in one single software package: