cd-hit
Software Description
CD-HIT is a program for clustering large protein database at high sequence identity threshold. The program removes redundant sequences and generate a database of only the representatives. It can be applied in protein family classification, domain analysis, organizing large protein databases, improving performance of database search, and much more.
Info
Module Name
cd-hit
Last Updated On
08/29/2023
Support Level
Secondary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
CD-HIT is a program for clustering large protein database at high sequence identity threshold. The program removes redundant sequences and generate a database of only the representatives. It can be applied in protein family classification, domain analysis, organizing large protein databases, improving performance of database search, and much more.
General Linux
To load this module for use in a Linux environment, you can run the command:
module load cd-hit
Depending on where you are working, there may be more than one version of cd-hit available. To see which modules are available for loading you can run:
module avail cd-hit
Agate Modules
Default
4.6.1
Other Modules
4.3, 4.6.1, 4.8.1
Mangi Modules
Default
4.6.1
Other Modules
4.3, 4.6.1, 4.8.1
Mesabi Modules
Default
4.6.1
Other Modules
4.3, 4.6.1, 4.8.1