ceas
Software Description
From the web site : We present a tool designed to characterize genome-wide protein-DNA interaction patterns from ChIP-chip and ChIP-Seq of both sharp and broad binding factors. As a stand-alone extension of our web application CEAS (Cis-regulatory Element Annotation System), it provides statistics on ChIP enrichment at important genome features such as specific chromosome, promoters, gene bodies, or exons, and infers genes most likely to be regulated by a binding factor. CEAS also enables biologists to visualize the average ChIP enrichment signals over specific genomic features, allowing continuous and broad ChIP enrichment to be perceived which might be too subtle to detect from ChIP peaks alone.
Info
Module Name
ceas
Last Updated On
08/29/2023
Support Level
Secondary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
From the web site : We present a tool designed to characterize genome-wide protein-DNA interaction patterns from ChIP-chip and ChIP-Seq of both sharp and broad binding factors. As a stand-alone extension of our web application CEAS (Cis-regulatory Element Annotation System), it provides statistics on ChIP enrichment at important genome features such as specific chromosome, promoters, gene bodies, or exons, and infers genes most likely to be regulated by a binding factor. CEAS also enables biologists to visualize the average ChIP enrichment signals over specific genomic features, allowing continuous and broad ChIP enrichment to be perceived which might be too subtle to detect from ChIP peaks alone.
General Linux
To load this module for use in a Linux environment, you can run the command:
module load ceas
Depending on where you are working, there may be more than one version of ceas available. To see which modules are available for loading you can run:
module avail ceas
Agate Modules
Default
1.0.2
Other Modules
1.0.2
Mangi Modules
Default
1.0.2
Other Modules
1.0.2
Mesabi Modules
Default
1.0.2
Other Modules
1.0.2