coot
Software Description
The (Crystallographic Object)-Oriented Toolkit Displays maps and models and allows certain model manipulations: idealization, real space refinement, manual rotation/translation, rigid-body fitting, ligand search, solvation, mutations, rotamers, Ramachandran plots, model validation and other stuff. Coot is part of the CCP4 Molecular Graphics Project. The Molecular Graphics Project has a wide remit and crystallographic map fitting is a part of that. The Coot functions have their own interface and some of them will be integrated into CCP4mg in due course.
Info
Module Name
coot
Last Updated On
08/29/2023
Support Level
Secondary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
The (Crystallographic Object)-Oriented Toolkit Displays maps and models and allows certain model manipulations: idealization, real space refinement, manual rotation/translation, rigid-body fitting, ligand search, solvation, mutations, rotamers, Ramachandran plots, model validation and other stuff. Coot is part of the CCP4 Molecular Graphics Project. The Molecular Graphics Project has a wide remit and crystallographic map fitting is a part of that. The Coot functions have their own interface and some of them will be integrated into CCP4mg in due course.
General Linux
To load this module for use in a Linux environment, you can run the command:
module load coot
Depending on where you are working, there may be more than one version of coot available. To see which modules are available for loading you can run:
module avail coot
Agate Modules
Default
0.8.3-pre
Other Modules
0.8.3-pre, 0.7-pre-1, 0.8.3-pre
Mangi Modules
Default
0.8.3-pre
Other Modules
0.7-pre-1, 0.8.3-pre
Mesabi Modules
Default
0.8.3-pre
Other Modules
0.8.3-pre, 0.7-pre-1, 0.8.3-pre