cufflinks
Software Description
Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.
Info
Module Name
cufflinks
Last Updated On
08/29/2023
Support Level
Secondary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.
General Linux
To load this module for use in a Linux environment, you can run the command:
module load cufflinks
Depending on where you are working, there may be more than one version of cufflinks available. To see which modules are available for loading you can run:
module avail cufflinks
Agate Modules
Default
2.2.1
Other Modules
2.2.1-haswell, 2.0.0, 2.1.1, 2.2.0, 2.2.1
Mangi Modules
Default
2.2.1
Other Modules
2.2.1-haswell, 2.0.0, 2.1.1, 2.2.0, 2.2.1
Mesabi Modules
Default
2.2.1
Other Modules
2.2.1-haswell, 2.0.0, 2.1.1, 2.2.0, 2.2.1