Cufflinks

Software Summary

Mesabi

Default Module: 

2.2.1

Other Modules Available: 

2.2.1-haswell, 2.0.0, 2.1.1, 2.2.0, 2.2.1

Last Updated On: 

Wednesday, December 7, 2016

Itasca

Default Module: 

2.2.1

Other Modules Available: 

2.2.1-haswell, 2.0.0, 2.1.1, 2.2.0, 2.2.1

Last Updated On: 

Wednesday, December 7, 2016

Lab

Default Module: 

2.2.1

Other Versions Available: 

2.0.0, 2.1.1, 2.2.0, 2.2.1

Last Updated On: 

Wednesday, December 7, 2016

Last Updated On: 

Wednesday, December 7, 2016

Support Level: 
Primary Support
Software Access Level: 
Open Access
Software Categories: 
Genetics
Software Description
Software Description: 

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.

Software Documentation

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