DeCypher

Search Software

The DeCypher enterprise biocomputing system combines bioinformatics applications with high throughput FPGA accerator hardware to achieve an ideal blend of accuracy, performance and value. It can be used for Tera-BLAST, Smith-Waterman, HMM analysis, GeneDetective and Tera-Probe searches.

SW Documentation: 
To run this software interactively in a Linux environment run the commands:
module load decypher
dc_run -parameters [PARAMETERFILE]

Other DeCypher utilities and templates may be found in the directories

/soft/decypher/VER/bin
/soft/decypher/VER/templates

where VER is the version of DeCypher you are using.  To get help with a specific command, use the -help option, e.g..

dc_run -help
The default DeCypher server is goldeneye. If you want to use mallard, in your home directory, create a .dcrc file with
content:D=mallard
or add
-server mallard
to your command line options.  
 
To use the DeCypher web interface you will need to login into either of the following servers:
 
Note that these servers are only accessible through the MSI network.  For remote access, you may connect via an NX session (recommended) or a Remote Desktop connection.  Once connected you can open a web browser and log into one of the servers listed above.
 
Note: The databases on the servers will be deleted if more than three years old.
 
Additional Information
Short Name: 
decypher-optim
SW Module: 
decypher
Service Level: 
Primary
SW Category: