EMBOSS (The European Molecular Biology Open Software Suite) is a new, free open source software analysis package specially developed for the needs of the molecular biology user community. Within EMBOSS you will find around 100 programs (applications) for sequence alignment, database searching with sequence patterns, protein motif identification and domain analysis, nucleotide sequence pattern analysis, codon usage analysis for small genomes, and much more.
To run this software interactively in a Linux environment run the commands:
module load emboss wossname
The wossname program will list all of the various EMBOSS applications, which are located in the directory
where VER is version of EMBOSS you are using.
To display documentation for a particular application, use the tfm command:
For further documentation, refer to the EMBOSS homepage.