Minnesota Supercomputing Institute
0.11.2, 0.11.5, 0.11.7, 0.11.8
Wednesday, April 3, 2019
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.
To run this software interactively in a Linux environment run the commands:
module load fastqc
FastQC can also be run from the command line. For a list of options, type the command: