FreeSurfer

Search Software

FreeSurfer is a set of automated tools for reconstruction of the brain’s cortical surface from structural MRI data, and overlay of functional MRI data onto the reconstructed surface.

SW Documentation: 

Calhoun

To access Free Surfer, set these in the pbs file:

export FREESURFER_HOME=/soft/freesurfer/5.1.0
export MNI_INSTALL_DIR=$FREESURFER_HOME/mni
export PERL5LIB=$MNI_INSTALL_DIR/lib/perl5/5.8.5
export MNI_DIR=${MNI_INSTALL_DIR}
source $FREESURFER_HOME/SetUpFreeSurfer.sh
export LIBGL_ALWAYS_INDIRECT=1

Itasca

To access Free Surfer, set these in the pbs file:

export FREESURFER_HOME=/soft/freesurfer/5.1.0
export MNI_INSTALL_DIR=$FREESURFER_HOME/mni
export PERL5LIB=$MNI_INSTALL_DIR/lib/perl5/5.8.5
export MNI_DIR=${MNI_INSTALL_DIR}
source $FREESURFER_HOME/SetUpFreeSurfer.sh
or documentation on Free Surfer, visit the pagehttp://surfer.nmr.mgh.harvard.edu/fswiki
Short Name: 
freesurfer
SW Module: 
freesurfer
Service Level: 
Minimal
SW Category: