FSL

FSL is a library of analysis tools for FMRI, MRI and DTI brain imaging data. It has both command line and graphical user interface.

To launch FSL in Linux machines, set these in the pbs file:

 

export FSLDIR=/soft/elmo/fsl/4.1.2

source $FSLDIR/etc/fslconf/fsl.sh

export PATH=$PATH:$FSLDIR/bin:$FSLDIR/etc

To use version 4.1.8 on Itasca, load the modulefile: 

module load fsl/4.1.8

To load 4.1.9 on Itasca, load the modulefile: 

module load fsl 
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