funannotate

Genetics

Software Description

Funannotate is a pipeline for genome annotation originally designed for use with fungi genomes, but it can also be applied for other eukaryotes.


Info

Module Name

funannotate

Last Updated On

08/31/2023

Support Level

Secondary Support

Software Access Level

Open Access

Home Page

https://github.com/nextgenusfs/funannotate

Documentation

Software Description

Funannotate is a pipeline for genome annotation originally designed for use with fungi genomes, but it can also be applied for other eukaryotes.

General Linux

In order to load Funannotate for interactive use on a Linux system, use the following command: 

module load funannotate

It is highly recommended that you do not load in any other modules alongside Funannotate, as this can disrupt Funannotate\'s dependencies. Please note that two of the dependencies of Funannotate are restricted-access software, for use by academic researchers only. In order to use Funannotate, contact help@msi.umn.edu and request access to SignalP4 and GeneMark-ET .

Agate Modules

Default

testing

Other Modules

1.5.0, 1.5.1, 1.5.3, 1.6.0, 1.8.1, 1.8.5, testing, 0.5.4, 0.6.0, 1.1.1, 1.1.1.CentOS7, 1.3.1, 1.3.1.CentOS7

Mangi Modules

Default

testing

Other Modules

1.5.0, 1.5.1, 1.5.3, 1.6.0, 1.8.1, 1.8.5, testing, 0.5.4, 0.6.0, 1.1.1, 1.1.1.CentOS7, 1.3.1, 1.3.1.CentOS7

Mesabi Modules

Default

testing

Other Modules

1.5.0, 1.5.1, 1.5.3, 1.6.0, 1.8.1, 1.8.5, testing, 0.5.4, 0.6.0, 1.1.1, 1.1.1.CentOS7, 1.3.1, 1.3.1.CentOS7