GATK

Software Summary

Mesabi

Default Module: 

4.1.2

Other Modules Available: 

3.2.2, 1.6, 3.3.0, 3.1.1, 3.4.0, 4.1.2, 3.5.0, 3.7.0, 3.6.0, 4.0.11, 4.0.6, 3.2.0, 2.7.2

Last Updated On: 

Monday, February 1, 2021

Mesabi K40

Default Module: 

4.1.2
Other Modules Available: 

3.2.2, 1.6, 3.3.0, 3.1.1, 3.4.0, 4.1.2, 3.5.0, 3.7.0, 3.6.0, 4.0.11, 4.0.6, 3.2.0, 2.7.2

Last Updated On: 

Monday, February 1, 2021

Mangi

Default Module: 
4.1.2
Other Modules Available: 

3.2.2, 1.6, 3.3.0, 3.1.1, 3.4.0, 4.1.2, 3.5.0, 3.7.0, 3.6.0, 4.0.11, 4.0.6, 3.2.0, 2.7.2

Last Updated On: 

Monday, February 1, 2021

Mangi v100

Default Module: 

4.1.2
Other Modules Available: 

3.2.2, 1.6, 3.3.0, 3.1.1, 3.4.0, 4.1.2, 3.5.0, 3.7.0, 3.6.0, 4.0.11, 4.0.6, 3.2.0, 2.7.2

Last Updated On: 

Monday, February 1, 2021

NICE

Default Module: 

4.1.2

Other Versions Available: 

3.2.2, 1.6, 3.3.0, 3.1.1, 3.4.0, 4.1.2, 3.5.0, 3.7.0, 3.6.0, 4.0.11, 4.0.6, 3.2.0, 2.7.2

Last Updated On: 

Monday, February 1, 2021

Last Updated On: 

Monday, February 1, 2021

Support Level: 
Primary Support
Software Access Level: 
Open Access
Software Categories: 
Genetics
Software Description

The GATK is a structured software library that makes writing efficient analysis tools using next-generation sequencing data very easy. Secondly, it's a suite of tools for working with human medical resequencing projects such as 1000 Genomes and The Cancer Genome Atlas. These tools include a depth of coverage analyzers, a quality score recalibrator, a SNP/indel caller, and a local realigner.

Software Documentation

Software Documentation Tabs