GATK

Software Summary

Mesabi

Default Module: 

3.3.0

Other Modules Available: 

1.6, 2.7.2, 3.1.1, 3.2.0, 3.2.2, 3.3.0, 3.4.0, 3.5.0, 3.6.0, 3.7.0

Last Updated On: 

Thursday, December 22, 2016

Itasca

Default Module: 

3.3.0

Other Modules Available: 

1.6, 2.7.2, 3.1.1, 3.2.0, 3.2.2, 3.3.0, 3.4.0, 3.5.0, 3.6.0, 3.7.0

Last Updated On: 

Thursday, December 22, 2016

Lab

Default Module: 

3.3.0

Other Versions Available: 

1.6, 2.7.2, 3.1.1, 3.2.0, 3.2.2, 3.3.0, 3.4.0, 3.5.0, 3.6.0, 3.7.0

Last Updated On: 

Thursday, December 22, 2016

Last Updated On: 

Thursday, December 22, 2016

Support Level: 
Primary Support
Software Access Level: 
Open Access
Software Categories: 
Genetics
Software Description
Software Description: 

The GATK is a structured software library that makes writing efficient analysis tools using next-generation sequencing data very easy. Secondly, it's a suite of tools for working with human medical resequencing projects such as 1000 Genomes and The Cancer Genome Atlas. These tools include a depth of coverage analyzers, a quality score recalibrator, a SNP/indel caller, and a local realigner.

Software Documentation

Software Documentation Tabs