GMAP

Software Summary

Mesabi

Default Module: 

2015-09-29

Other Modules Available: 

2012-06-02, 2012-10-31, 2015-09-29, 2016-11-07, 2017-03-17, 2017-06-20, 2018-07-04

Last Updated On: 

Wednesday, October 10, 2018

Mesabi K40

Default Module: 

2015-09-29
Other Modules Available: 

2012-06-02, 2012-10-31, 2015-09-29, 2016-11-07, 2017-03-17, 2017-06-20, 2018-07-04

Last Updated On: 

Wednesday, October 10, 2018

Mangi

Default Module: 
2015-09-29
Other Modules Available: 

2012-06-02, 2012-10-31, 2015-09-29, 2016-11-07, 2017-03-17, 2017-06-20, 2018-07-04

Last Updated On: 

Wednesday, October 10, 2018

Mangi v100

Default Module: 

2015-09-29
Other Modules Available: 

2012-06-02, 2012-10-31, 2015-09-29, 2016-11-07, 2017-03-17, 2017-06-20, 2018-07-04

Last Updated On: 

Wednesday, October 10, 2018

NICE

Default Module: 

2015-09-29

Other Versions Available: 

2012-06-02, 2012-10-31, 2015-09-29, 2016-11-07, 2017-03-17, 2017-06-20, 2018-07-04

Last Updated On: 

Wednesday, October 10, 2018

Last Updated On: 

Wednesday, October 10, 2018

Support Level: 
Secondary Support
Software Access Level: 
Open Access
Software Categories: 
Genetics
Software Description

GMAP is a standalone program for mapping and aligning cDNA sequences to a genome. The program maps and aligns a single sequence with minimal startup time and memory requirements, and provides fast batch processing of large sequence sets. The program generates accurate gene structures, even in the presence of substantial polymorphisms and sequence errors, without using probabilistic splice site models. Methodology underlying the program includes a minimal sampling strategy for genomic mapping, oligomer chaining for approximate alignment, sandwich DP for splice site detection, and microexon identification with statistical significance testing.

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