GraphClust

GraphClust can be used for structural clustering of RNA sequences. Especially it can be used for clustering of very large dataset with thousands of RNAs.

http://www.bioinf.uni-freiburg.de/Software/GraphClust/

To run this software in a Linux environment run the commands:

module load viennarna rnashapes rnaz infernal cmfinder locarna octave R ncbi_blast graphclust
MASTER_GraphClust.pl
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