Haploview

Software Summary

Mesabi

Default Module: 

4.1

Other Modules Available: 

4.1

Last Updated On: 

Wednesday, April 3, 2019

Mesabi K40

Default Module: 

4.1
Other Modules Available: 

4.1

Last Updated On: 

Wednesday, April 3, 2019

Mangi

Default Module: 
4.1
Other Modules Available: 

4.1

Last Updated On: 

Wednesday, April 3, 2019

Mangi v100

Default Module: 

4.1
Other Modules Available: 

4.1

Last Updated On: 

Wednesday, April 3, 2019

NICE

Default Module: 

4.1

Other Versions Available: 

4.1

Last Updated On: 

Wednesday, April 3, 2019

Last Updated On: 

Wednesday, April 3, 2019

Support Level: 
Secondary Support
Software Access Level: 
Open Access
Software Categories: 
Genetics
Data Visualization
Software Description

Haploview is a graphical program for haplotype analysis. It can analyze thousands of SNPs (tens of thousands in command line mode) in thousands of individuals. It supports the following functionalities: LD haplotype block analysis- haplotype population frequency estimation- single SNP and haplotype association tests- permutation testing for association significance- implementation of Paul de Bakker's Tagger tag SNP selection algorithm- automatic download of phased genotype data from HapMap visualization and plotting of PLINK whole genome association results including advanced filtering options.

Software Documentation

Software Documentation Tabs