HDF

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HDF is a library and a multi-object file format that facilitates the transfer of various types of scientific data between machines and operating systems. There are two versions of HDF available at MSI, HDF4 and HDF5. The physical file formats of HDF4 and HDF5 are different. HDF5 also has a collection of utilities for manipulating data.

SW Documentation: 

Calhoun

Calhoun has HDF5 built for both serial and thread parallel applications.

To run HDF5 interactively in a Linux environment run the command:

module load hdf5/hdf5-1.8.7-intel-serial

Labs

 To run HDF5 interactively in a Linux environment run the command:

module load hdf5

Examples

Examples of how to use HDF5 routines can be found on the Lab Linux systems in

/soft/hdf5/1.8.5-patch1/share/hdf5_examples/

Itasca

To run HDF5 interactively in a Linux environment run the command:

 module load hdf5/hdf5-1.8.7-intel-pmpi

or

 module load hdf5/hdf5-1.8.7-intel-serial

On Itasca, examples can be found in

 /soft/hdf5/hdf5-1.8.7-intel-serial/share/hdf5_examples

 /soft/hdf5/hdf5-1.8.7-intel-pmpi/share/hdf5_examples

 

Short Name: 
hdf
SW Module: 
hdf5
Service Level: 
Ancillary
SW Category: