HMMER

Software Summary

Mesabi

Default Module: 

3.1b2_gcc-4.9.2_haswell

Other Modules Available: 

3.1b2_gcc-4.9.2_haswell, 3.3.2-openmpi-4.1.5-gcc-13.1.0-67byr44, 3.3.2-openmpi-4.1.5-gcc-8.2.0-d5h5fvl, 2.3.2, 3.0, 3.1-snap20121016, 3.1b2, 3.2.1

Last Updated On: 

Tuesday, November 14, 2023

Mesabi K40

Default Module: 
Other Modules Available: 
Last Updated On: 

Mangi

Default Module: 
3.3.2-openmpi-4.1.5-gcc-8.2.0-d5h5fvl
Other Modules Available: 

3.3.2-openmpi-4.1.5-gcc-13.1.0-67byr44, 3.3.2-openmpi-4.1.5-gcc-8.2.0-d5h5fvl, 2.3.2, 3.0, 3.1-snap20121016, 3.1b2, 3.2.1

Last Updated On: 

Tuesday, November 14, 2023

Mangi v100

Default Module: 
Other Modules Available: 
Last Updated On: 

NICE

Default Module: 
Other Versions Available: 
Last Updated On: 
Last Updated On: 

Tuesday, November 14, 2023

Support Level: 
Secondary Support
Software Access Level: 
Open Access
Software Categories: 
Biostatistics
Genetics
Software Description

HMMER is an implementation of profile hidden Markov model (HMM) methods for sensitive database searches using multiple sequence alignments as queries. HMMER takes a multiple sequence alignment as input. It can then build a statistical model called a "hidden Markov model" which can be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.

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