Minnesota Supercomputing Institute
3.1b2_gcc-4.9.2_haswell, 2.3.2, 3.0, 3.1-snap20121016, 3.1b2, 3.2.1
Tuesday, February 23, 2021
2.3.2, 3.0, 3.1-snap20121016, 3.1b2, 3.2.1
HMMER is an implementation of profile hidden Markov model (HMM) methods for sensitive database searches using multiple sequence alignments as queries. HMMER takes a multiple sequence alignment as input. It can then build a statistical model called a "hidden Markov model" which can be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.
module load hmmer
hmmbuild [-options] hmmout.file align.file