HMMER

Software Summary

Mesabi

Default Module: 

3.1b2_gcc-4.9.2_haswell

Other Modules Available: 

3.1b2_gcc-4.9.2_haswell, 2.3.2, 3.0, 3.1-snap20121016, 3.1b2

Last Updated On: 

Wednesday, December 7, 2016

Itasca

Default Module: 

3.1b2

Other Modules Available: 

3.1b2_gcc-4.9.2_haswell, 2.3.2, 3.0, 3.1-snap20121016, 3.1b2

Last Updated On: 

Wednesday, December 7, 2016

Lab

Default Module: 

3.1b2

Other Versions Available: 

2.3.2, 3.0, 3.1-snap20121016, 3.1b2

Last Updated On: 

Wednesday, December 7, 2016

Last Updated On: 

Wednesday, December 7, 2016

Support Level: 
Primary Support
Software Access Level: 
Open Access
Software Categories: 
Biostatistics
Genetics
Software Description
Software Description: 

HMMER is an implementation of profile hidden Markov model (HMM) methods for sensitive database searches using multiple sequence alignments as queries. HMMER takes a multiple sequence alignment as input. It can then build a statistical model called a "hidden Markov model" which can be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.

Software Documentation

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