HMMER

Software Summary

Mesabi

Default Module: 

3.1b2_gcc-4.9.2_haswell

Other Modules Available: 

3.1b2_gcc-4.9.2_haswell, 2.3.2, 3.0, 3.1-snap20121016, 3.1b2, 3.2.1

Last Updated On: 

Tuesday, February 23, 2021

Mesabi K40

Default Module: 

3.1b2_gcc-4.9.2_haswell
Other Modules Available: 

3.1b2_gcc-4.9.2_haswell, 2.3.2, 3.0, 3.1-snap20121016, 3.1b2, 3.2.1

Last Updated On: 

Tuesday, February 23, 2021

Mangi

Default Module: 
3.1b2
Other Modules Available: 

2.3.2, 3.0, 3.1-snap20121016, 3.1b2, 3.2.1

Last Updated On: 

Tuesday, February 23, 2021

Mangi v100

Default Module: 

3.1b2
Other Modules Available: 

2.3.2, 3.0, 3.1-snap20121016, 3.1b2, 3.2.1

Last Updated On: 

Tuesday, February 23, 2021

NICE

Default Module: 

3.1b2

Other Versions Available: 

2.3.2, 3.0, 3.1-snap20121016, 3.1b2, 3.2.1

Last Updated On: 

Tuesday, February 23, 2021

Last Updated On: 

Tuesday, February 23, 2021

Support Level: 
Secondary Support
Software Access Level: 
Open Access
Software Categories: 
Biostatistics
Genetics
Software Description

HMMER is an implementation of profile hidden Markov model (HMM) methods for sensitive database searches using multiple sequence alignments as queries. HMMER takes a multiple sequence alignment as input. It can then build a statistical model called a "hidden Markov model" which can be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.

Software Documentation

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