Note: Due to lack of use, this software module has been disabled and will be removed from MSI systems on 12/20/17. If you need this software, please contact email@example.com.
"Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities. It is an implementation of a special case of profile stochastic context-free grammars called covariance models (CMs). A CM is like a sequence profile, but it scores a combination of sequence consensus and RNA secondary structure consensus, so in many cases, it is more capable of identifying RNA homologs that conserve their secondary structure more than their primary sequence."
To run this software interactively in a Linux environment run the commands:
module load infernal cmalign